barSeed - Barley Seed Development Database

Probe ABC17513

Source Contig ABC17513

barSeed

Links

Affymetrix Source Sequence (799 bp)

>ABC17513 799
GAGCATACAACTAGGGGTGGTGCAGAAACATAGATAGTTAGCTGAGTTAGCATTTACGTT
ATTACTGTATAGTCCTTATCTATTATGTTTATGGCAATCATGATGTTTCCTAAGTATTTA
TAATCCTTCTTTTATTCAGTTTTATTGATATACTACATGAAGCTCCCCTGTATGGTCACT
GAGAGCCCAGGAGCATAGTTAGTGGCACCTTGTATTGTATAATAGTGGTCCCCATAAAGC
TTTGTAGTATATTGAGTTTGTCCAATAGCCTCAAATGTGTTTTACCAGGTGTTTGTTCAC
AGTATAAGATTGCCAAAAAATAGCATGGTTGGTGATGTTTTAAGCGATGTCATATGAAAG
TCATTGTCAATCAAGTTGACCTGTCCCATCCTGATGCTGAACTTAGATTGCTTGAAGTAT
TCTACCACAAAATATACAAGATTTTTGCACCCACTGAAAAGATAGAAAACATCAACGATC
AGTACTGGACACTACGTGCAGAGGAGGCGTCAATGGCAAGAGTGGCATATTGTACAGTGG
AAGAGGATGAGAAGAAACTTGTGCTTCTCATTCAAACTTTCTCTATCTCTCTTTATGTGT
GATTGTGTACTTGTTGGGTCCTTCTTTTGTACATTTGCACTTGCAGAAGTATTATGTTGT
GCACTTGTAAAATTATTTTGATGTGCACTTGTTAGGCCTTGAACCTTAATGTGTGGAGGA
GTCGGTGGATGATATATTGTATTTCATCTGATGTGCTACTGAAATGAAATATACAGTTTA
TCTTCAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249678.1	1547	0.0	743 - 1542	99	798 / 800	CUST_3243_PI390587928	ABC03677 ABC06191 ABC13360 ABC17513 ABC21924 ABC24067 ABC34989 ABC49897
AK371668	1529	1e-96	1264 - 1527	91	240 / 264	None	ABC05172 ABC06188 ABC13360 ABC17513 ABC21924 ABC24067 ABC34989 ABC46334
MLOC_30852.1	368	4e-87	86 - 362	88	244 / 278	None	ABC01494 ABC05171 ABC05172 ABC05174 ABC12127 ABC17513 ABC21351 ABC21924 ABC24067 ABC30081 ABC44566 ABC44948
MLOC_1624.1	232	2e-84	1 - 230	91	210 / 230	None	ABC01497 ABC05172 ABC06188 ABC12128 ABC13360 ABC16799 ABC17513 ABC21924 ABC24067 ABC33341 ABC38349 ABC46334
MLOC_73521.5	848	4e-82	303 - 519	92	200 / 217	None	ABC06191 ABC14343 ABC17513
MLOC_73521.6	1579	4e-82	275 - 491	92	200 / 217	None	ABC14343 ABC17513
AK374695	634	8e-79	359 - 630	86	240 / 278	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK370602	4040	2e-75	2894 - 3100	91	201 / 221	CUST_41841_PI390587928 CUST_9177_PI390587928	ABC03677 ABC17513 ABC44273
MLOC_23339.1	200	4e-67	49 - 196	98	145 / 148	None	ABC03677 ABC17513