barSeed - Barley Seed Development Database

Probe ABC03677

Source Contig ABC03677

barSeed

Links

Affymetrix Source Sequence (2496 bp)

>ABC03677 2496
TGATCAGTGGTTCAAGTTTGATGATGAGCGTGTAACAAAAGAAGATGCAAAGAGAGCATT
GGAAGAGCAATATGGTGGTGAGGAGGAGCTACCCCAGACCAATCCTGGCTTAAACAACAC
TCCGTTCAAGTTTACCAAATATTCAAACGCATACATGCTTGTATACATTCGTGAAAGCGA
CAAGGATAAAATAATTTGTAATGTGGATGAGAAGGACATAGCTGAGCACCTTCGAATTAG
ACTAGAAAAGGACCGTGAAGAGAAGGAGCGCCGGAAAAAGGAGAAAGCTGAGGCCCACCT
ATATACCATCATTAAGGTTGCTAGGGATGACGACTTGACTGCTCAGATTGGGAAAGATAT
ATATTTTGATCTTGTTGATCATGATAAAGTCCCGAGCTTCCGTATTCAAAAGCAGATGCC
TTTTACTCAATTCAAGGAGGAGGTAGCAAAAGAATTGGGCATTCCAACACAGTTTCAACG
TTTTTGGTTGTGGGCCAAGCGGCAAAACCATACGTACCGACCCAATCGACCGTTGACTCC
TCAAGAAGAAGCACTCACTGTTGGACAACTAAAGGAAGCAGCAAACAAGGCCCACAACGC
AGAACTGAAGTTGTTCTTGGAAGTTGAACTTGGACTGGACCTAAAACCTCTTGCTCTACC
AGACAAGACCAGAGATGATATTTTGCTTTTCTTCAAACTCTATGATCCTGAAAAGGAACA
GTTGCGGTATGTTGGTAGGCTCTTTGTGAAGGCTTCAGGAAGACCACAGGATATTCTGCC
AAAATTGAGAAAAATGGCTGGTTTTTTGCAGGATGATGATGTTGAGCTTTATGAGGAAAT
TAAGTTCGAGCCAAATGTGATGTGTGAGTACATTGATAATAGAATTATATTCCGGTCTTG
CCAGCTGGAAGATGGTGATATTGTTTGTTTTCAAAAATCCCCAAAGCCAGATACTTCTGA
CCAATTTAGATACCCTGATGTCCCATCGTTTCTGGTGTATATACGTAACAGACAGGTTGT
CCACTTCCGGTCGTTGGAGAAGCCCAAGGAGGATGACTTTTGCCTAGAGATGTCAAAGAT
TTTCACGTACGATGAAGTTGTAGAAAAAGTCGCTCAACAGCTTGGTGTTGATGACCCATC
AAAAATTCGTCTTACATCACATAATTGTTACTCTCAACAGCCTAAGCCTCAACCAATTAA
GTACAGAGGCGTTGAACGTTTGCTAGATATGCTGATTCATTATAATCAGACTTCTGATAT
TCTGTACTATGAAGTATTGGATATACCCCTGCCAGAACTACAGGCATTGAAGACATTAAA
AGTTACATATCATCATGCCACCAAGGATGAGGTGTCTGTTCACAGTATAAGATTGCCAAA
AAATAGCACGGTTGGTGATGTTTTAAGCGATATCAAATCAAAGGTTGACCTGTCCCATCC
TGATGCTGAACTTAGATTGCTTGAAGTATTCTACCACAAGATATACAAGATTTTTGCACC
CAGTGAAAAGATAGAAAACATCAACGATCAGTACTGGACACTACGTGCAGAGGAGGTACC
AGAGGAGGAGAAAAACCTTGGTCCTTTTGATCGCTTGATTCATGTATACCATTTTACCAA
AGACACTCAAAACCAAACGCAAGTTCAGAATTTTGGAGAACCTTTCTTTATGGTTATTCG
TGAGGATGAGACCTTATCTTCTATCAAAGAACGTTTACAGAAAAAGCTTAAGGTCTCAGA
AGAGGATTTCTCCAAGTGGAAATTTGCATACATATCCCTTGGCCGGCCAGACTATTTTGA
AGATTCTGATAGTGTAGCTACGAGATTTCAGAGAAACATGTATGGAGCTTGGGAGCAGTA
TCTTGGACTGGAGCACCCAGACACAGCGCCAAGAAAGGCACATAGTGCTAACCAGAACCG
CCATTCGTTTGAGAGGCCTGTAAAGATCTACAACTAGACAGTTGTGAGAAGCAGGAGTGA
TATCCTGCCACGCAATACCACCAAGCAAGTGGCTGAAACTGAAATTGCTGGCTTGAATAA
ATCGTGTACCATATGATGGCAGGACTGGTTGCTCAAGTTAATGACGGAGCCTGTAAGCTA
GCTTTTCCCCGCACTCTGCCCTGGATATATAAAGTTTTTGCAGAGATGACCCAACGAACC
ATCACCTTCTAGTAGATGAGGAGGCTGTTTTTCTTTTCTTCCACTAGGTGCTCTATACAG
TCAACTAGCTAGTGGATTGCTTGGTTCTGCAGTTGTTGCTAGGTGCAGAGTTGTTGATGA
TGCTTTTTTTCTGTATATTATTGTTGTGAGCTGTACAAGTGCAGTCGTTGTTGATGGTCA
TACGGTATCTGTAACTCCAGTGATGATATAGTGGCTGCGTCTTTTCACAAATTTGTATCT
GATTCTCCTAAGCTGTCCTAGAGGGCTGTTACCGCACCTGACTCGAAGTTTGGGCTTCCT
TACCCTCTGCTCTTCAAAAGTATGCTAATATGTTTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK370602	4040	0.0	1545 - 4040	99	2493 / 2496	CUST_9177_PI390587928 CUST_41841_PI390587928	ABC03677 ABC17513 ABC44273
MLOC_12516.2	2984	0.0	1508 - 2984	100	1477 / 1477	CUST_9177_PI390587928	ABC03677
MLOC_12516.1	3000	0.0	1524 - 3000	100	1477 / 1477	CUST_9177_PI390587928	ABC03677
MLOC_12516.3	2848	0.0	1371 - 2848	99	1477 / 1478	CUST_9177_PI390587928	ABC03677
MLOC_12516.4	3081	4e-166	1462 - 1779	100	318 / 318	CUST_9177_PI390587928	ABC03677
MLOC_78372.1	1263	0.0	4 - 946	99	942 / 943	CUST_41841_PI390587928	ABC03677 ABC44273
MLOC_78372.2	1505	0.0	331 - 1188	99	857 / 858	CUST_41841_PI390587928	ABC03677 ABC44273
MLOC_68418.1	1127	3e-147	4 - 1004	76	768 / 1007	None	ABC03677 ABC03678
AK249678.1	1547	6e-75	1030 - 1250	91	201 / 221	CUST_3243_PI390587928	ABC03677 ABC06191 ABC13360 ABC17513 ABC21924 ABC24067 ABC34989 ABC49897
MLOC_23339.1	200	2e-65	62 - 198	100	137 / 137	None	ABC03677 ABC17513