barSeed - Barley Seed Development Database

Probe CUST_9177_PI390587928

Source Contig U35_6992

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9177_PI390587928	Hv_44K_v2	AGATGAAGGGAACCCGTTGTGGAGGGCACAATACAACAATTATTTGAAGGGCATCACATG	1027	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.036	0.838	1.416	1.124	0.972	0.870
Raw	163.833	187.478	303.879	334.366	113.150	114.391

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370602	4040	3e-22	1037 - 1095	98	59 / 60	plus	ABC03677 ABC17513 ABC44273
MLOC	MLOC_12516.4	3081	3e-22	954 - 1012	98	59 / 60	plus	ABC03677
MLOC	MLOC_12516.2	2984	3e-22	1000 - 1058	98	59 / 60	plus	ABC03677
MLOC	MLOC_12516.3	2848	3e-22	863 - 921	98	59 / 60	plus	ABC03677
MLOC	MLOC_12516.1	3000	3e-22	1016 - 1074	98	59 / 60	plus	ABC03677
JLOC1	JLOC1_8397.1	2998	1e-22	1014 - 1072	98	59 / 60	plus
Harvest21	ABC15535	1087	3e-25	1028 - 1087	100	60 / 60	plus
Harvest35	U35_6992	1087	3e-25	1028 - 1087	100	60 / 60	plus

Contig Sequence (1087 bp)

>U35_6992 1087 Hv_44K_v2
TTCGGCGCGAGCTCTCCTCCACCTCCCCCCTTCCCCCATCCCCACCTCGCGATCTCCACG
CCTCCCGCAACCCACTGCCGGGGCAGGCCCCAAATCGCCGCCGGTCACCCCCTGGTCCCC
TCCCCCGTCTCTATGACGATCTCCACACCGCCCCCGGCGCCCGCAGAGCAGCACCCGCGG
CAGGAGGAAGAGGAGGTGCTCGTGCCGCACCAGGAGCTACCCAACGGGACGCAGCCAATG
GAAGTTGTGCCTGCTGAGCCAGCTGCTACTGTCGAAAACCAGCCAACGGAGGATACACCA
ATCTCGAGATTTACTTGGACCATTGATAACCTATCAAGAGTGAATACGAAGAAGCTCTAT
TCTGAAACTTTTGTTGTTGGTGGCTACAAGTGGCGAGTTTTGATTTTCCCAAGGGGAAAT
AATGTTGAGTTCTTGTCTATGTATTTGGATGTTGCCGATTCAGCAGTCTTGCCCTATGGA
TGGACTAGATATGCACAGTTCAGCCTCTCAGTGGTTAACCAAATTCACAACAAGTTTACA
ATAAGAAAAGAAACACAACATCAGTTCTCTGCTCGAGAAAGCGACTGGGGTTTCACTTCT
TTTATGCCTTTGAGTGAACTCTACAATCCCAGTAGAGGCTATCTTGTAAATGATACTTGT
GTAATAGAAGCAGAGGTTGCCGTGTGTAAGGTTGTTGATTATTGGAGTTATGACTCTAAA
AAGGAGACTGGCTATGTTGGCCTCAAAAACCAAGGTGCCACTTGCTATATGAATTCTCTC
CTTCAGACTCTCTATCACATTCCATATTTCAGAAAGGCGGTTTATCATATGCCCACTACT
GAGAATGATATGCCCTCAGGAAGCATTCCATTAGCTCTTCAAAGTCTCTTCTATAAGCTG
CAGTATAATGACAGCAGTGTTTCCACAAAGGAGCTAACAAAATCTTTTGGGTGGGACATG
CATGATTCATTTATGCAACATGATGTGCAAGAACTAAATAGAGTTCTTTCTGAGAAGTTG
GAAGATAAGATGAAGGGAACCCGTTGTGGAGGGCACAATACAACAATTATTTGAAGGGCA
TCACATG

Homology of Contig U35_6992 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g30540.1	1126	1e-165	protein\|ubiquitin carboxyl-terminal hydrolase, putative, expressed
Brachypodium v1_2	Bradi1g56780.1	1123	0.0
Arabidopsis v10	AT5G06600.1	1116	2e-164	\| Symbols: UBP12 \| ubiquitin-specific protease 12 \| chr5:2019545-2027834 REVERSE LENGTH=1116