barSeed - Barley Seed Development Database

Probe ABC44948

Source Contig ABC44948

barSeed

Links

Affymetrix Source Sequence (633 bp)

>ABC44948 633
GCACATATCACTGTGATAGGCTCCCCATGCATGTACTTGAGCCTTTTAGGTAATGTTATA
GAAAATAGCTATGAGTCAGTCTTTTCTACATGCAGATTCTTATCAACGAAGTGAATCACA
TAGAATATTTTATACTCATCAAGTAACAGTAACGATAGCTATTTTGTTGTATGTATATTA
AACAGTTTGTCTACCAGCCATTATTTTCTTATGTGTACTATAAGCAAAGTCGATCCTCAT
CTCCCTCATGTTTACTGCTACAAAATTGGTGCGCCTAAGTTTTGGCCCTCAATCCCATTT
TCTTCTTGCAGGCGACAATGGCAAGAGCATATTGTGCAGAGGAAGAGGATGAGAAGAAAC
TTGTGGTTCTCATCCAATCTTTGTGGAACTTTCTTTATGTGCGATTACGCACTTGTTGGG
TCCTTTTTTCGTGCACTTGTACTTGCAGAAATATTCTGTTGTGCGCATGTAAAACTATTT
TGATGTGCCCTTGTGCCCTTGTTAGGCGTTGAACCTTAATGCATGGAGTCGTGGATGATG
TTTTGTATTTATGTGATATGCTACTAAATGAAATATACATTTTATTTGCAATCTTTTATT
CTGTTATACTTATTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_46027.1	373	4e-151	69 - 373	98	300 / 305	CUST_698_PI390587928	ABC44948
MLOC_50298.1	434	5e-115	1 - 268	95	254 / 268	None	ABC44948
MLOC_1191.1	232	3e-112	1 - 232	98	228 / 232	CUST_698_PI390587928	ABC44948
MLOC_48355.1	812	4e-111	1 - 267	94	251 / 267	None	ABC44948
AK250016.1	2853	8e-98	2566 - 2853	89	264 / 296	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
AK374695	634	2e-94	359 - 634	89	254 / 284	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_60076.1	511	1e-90	1 - 259	90	240 / 267	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK359738	1264	5e-90	976 - 1264	88	260 / 297	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK365264	1315	5e-90	1043 - 1313	89	248 / 279	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK250595.1	856	2e-89	581 - 856	88	251 / 284	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK370037	1546	2e-89	1293 - 1546	90	236 / 262	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK249247.1	750	7e-89	456 - 733	88	252 / 286	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_30852.1	368	9e-68	72 - 368	83	253 / 305	None	ABC01494 ABC05171 ABC05172 ABC05174 ABC12127 ABC17513 ABC21351 ABC21924 ABC24067 ABC30081 ABC44566 ABC44948
AK252392.1	1995	4e-66	1760 - 1977	88	198 / 226	None	ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC34978 ABC44948
MLOC_81791.1	171	1e-55	5 - 171	90	151 / 167	CUST_30308_PI390587928	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
MLOC_60284.3	2864	4e-51	2 - 156	90	140 / 155	CUST_29256_PI390587928	ABC12128 ABC38349 ABC44948
MLOC_60284.6	1952	4e-51	1 - 155	90	140 / 155	CUST_29256_PI390587928	ABC12128 ABC38349 ABC44948
MLOC_60284.2	2258	4e-51	2 - 156	90	140 / 155	CUST_29256_PI390587928	ABC05973 ABC12128 ABC38349 ABC44948
MLOC_60284.4	2757	4e-51	2 - 156	90	140 / 155	CUST_29256_PI390587928	ABC05973 ABC12128 ABC38349 ABC44948