barSeed - Barley Seed Development Database

Probe ABC49963

Source Contig ABC49963

barSeed

Links

Affymetrix Source Sequence (704 bp)

>ABC49963 704
ATCAGATGGAAATTATGCTTCTGACCCAGCTGTTAAAGTATACATAGCTGCATAAATCAA
CTTGAACGTTTTAGATGTCTCATCAAGACCTCCTCATGTGTCTCTGNTTTATATTCACCC
ATCGAGATTTCTATCTATGTACTCTGCCAATATGTGTCATATATAATGTAATTAACAAAT
GGGCCAACATAAAACCTTCAATAGACAGCCACTCAACCAAGCTCTTCAGTCTACTATCTG
TTCTTTATCTTTAATAAACAAAAAACGAAAAATTTAGATGACCTTTCCCATGGGCGCAGT
GGCATGCCGCGTTTTTCGCGCTAGTATATATATATGATAGTTTTTATGACCTCATAAGTC
ATAACTAGATGAATGAGAAAACAATTTTCTACTGTTTTATCATTGGTTATCGTGCTTGCA
ATTTTACTACTTTTCTTGGTCTGAAAGCCTTACCATCATTTTCTTCTTGCAGGCGGCAAT
GGCAATGGCAAGAGCATATTGTGCAGAGGAAGAGGGTGAGAAGAAACTGGTGGTTCTCAT
CCAATCTTTGTGGAACTCTCTTTATGTGCGATTGTGCATTTGTTGGAACCTTTTTCTGAC
TTGCAGAAGTATTCTGTTGTGCACATGTAAAATTATTTTGATGTGTCCTTGTTAGGCGTT
GAACCTTAATGCGTGGAATCAGTGGATGATGTATTGTATTTGAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_30440.1	361	1e-161	1 - 315	99	313 / 315	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_41254.1	292	1e-146	1 - 292	99	289 / 292	None	ABC49963
MLOC_28160.1	929	5e-140	299 - 678	91	350 / 386	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK252837.1	2740	1e-121	2466 - 2702	100	237 / 237	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_42087.1	502	4e-111	243 - 502	95	247 / 261	None	ABC49963
MLOC_42087.2	532	2e-110	274 - 532	95	246 / 260	None	ABC49963
MLOC_42087.3	505	2e-110	247 - 505	95	246 / 260	None	ABC49963
MLOC_33574.1	258	3e-102	1 - 258	93	245 / 264	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
AK359738	1264	1e-101	895 - 1226	87	295 / 338	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_61318.1	383	3e-92	1 - 383	85	324 / 383	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
MLOC_64313.1	278	3e-87	40 - 278	91	226 / 249	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
AK250595.1	856	7e-84	585 - 818	91	214 / 234	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_78323.1	239	7e-84	13 - 239	91	213 / 233	None	ABC19962 ABC34978 ABC34989 ABC44562 ABC44566 ABC46334 ABC49963
AK365264	1315	3e-78	1045 - 1277	90	210 / 233	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK362032	681	2e-75	411 - 635	90	203 / 225	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	2e-75	427 - 651	90	203 / 225	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK372031	1366	2e-74	1069 - 1297	90	205 / 229	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
MLOC_79251.1	406	3e-73	2 - 181	94	171 / 181	None	ABC49963
MLOC_79251.2	408	3e-73	2 - 181	94	171 / 181	None	ABC49963
MLOC_79251.3	426	8e-59	4 - 145	96	137 / 143	None	ABC49963
MLOC_79251.4	439	8e-59	4 - 145	96	137 / 143	None	ABC49963
MLOC_41969.1	282	4e-57	138 - 282	95	138 / 146	None	ABC44562 ABC44566 ABC49963
MLOC_669.1	946	1e-56	794 - 946	92	147 / 159	None	ABC34978 ABC34989 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_2874.2	1593	5e-56	1391 - 1575	88	168 / 191	CUST_2527_PI390587928	ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC16799 ABC19962 ABC30081 ABC33341 ABC34978 ABC38349 ABC44562 ABC44566 ABC49963
MLOC_1753.1	3578	6e-55	3308 - 3478	89	159 / 178	CUST_15698_PI390587928 CUST_8718_PI390587928 CUST_20789_PI390587928 CUST_18870_PI390587928	ABC05172 ABC12127 ABC12128 ABC30081 ABC34978 ABC34989 ABC44562 ABC46334 ABC49963
MLOC_35304.3	1560	2e-54	25 - 185	90	151 / 167	None	ABC05172 ABC13209 ABC19962 ABC30081 ABC34978 ABC34989 ABC43152 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_35304.4	1555	2e-54	25 - 185	90	151 / 167	None	ABC05172 ABC13209 ABC19962 ABC30081 ABC34978 ABC34989 ABC43152 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_591.1	166	8e-54	1 - 166	90	154 / 172	None	ABC19962 ABC34978 ABC34989 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_27395.1	766	3e-53	587 - 766	88	163 / 186	None	ABC05172 ABC12127 ABC12128 ABC30081 ABC49963