barSeed - Barley Seed Development Database

Probe ABC05377

Source Contig ABC05377

barSeed

Links

Affymetrix Source Sequence (1622 bp)

>ABC05377 1622
GGTCGCCTCCTTCCCTTCCGATTGCCGCCGCCACCTCCCTCCCCATCCCCTCGCCGCACC
CGCTGTAGCTCCCACCCTCCCAGCCGCACCAGTGCACGTTGTCGTTCGCTCCTCTACCTG
CAGGCGATGCCGAGCCCGCGGTCTCCCTCCCCAAGATTGCTCTGGAGCCCGCTGTCCTCC
TACACCTACAGCGGGAACATGCAGGAGCAGCAGTGAGCCAGATCTGGGCCTTGTCGAGGA
GGTCTGTCTCTGGAGCCGCTGATGGGGGCCATAGCGGCGGGGAACGCCGTGGCGCTGAAG
CCGTCGGAGCTGGCGCTGTCAACGGCCAGGTTCCTGGAAGAGAACATAGGCGAGTACCTG
GACGCCAATGCGGTGAAGGTCATCCAGGGCGGCCCCGCGGTGGGCGAGCAGCTGATGGAG
CACCAATGGGACAAGGTCCTCTTCACCGCAATTTGGCAGGGTGCCTGCGCGTGGCACGCG
TGGTGATGGCGGGGCGACGAAGCACCTAACGCCGGTGGCGCTGGAGCTGGGCGGGAAGTG
CCCCTGCATCTTCGAAGCCGTTGCCGGCTAGAGGAACCTCCAGTCCTGTGTGAACCGCGT
GATCTTCGCCAAGTGGTCATCCTGCGCCGGCCAGGCCTGCATCGCCATCGACTACGTGCT
CGTCGAGGAGCGATTCGCGCCCACCCTGTTGCTCAAATCGACGCTCAAGAGGTTCATCAC
CGACTCGGACGAGATGGCGCGGAACGTCAACGCGCGACATTTCAAGCGGCTGAGTAACCT
CCTCAAGGACCCGGCGGTGGCGGCATCCATTACATCCAGAGAATCCCAGGTATGAGATAT
TTCTCTTCTGATGATTATTTTATCCTCCCTCCAGAGAATCCCAGGTTGGTGGATCTGGTT
CTACTACATCTGCAGACCTGGCCTTGAGGGGGGCAGGGGGGCGGCGATTTAGCGAAGTAA
TCATATGTTGATGCAGTTCGTCGTCGTCTCATCTATGCCGATCTCCACTCCCGAGCGTCC
CCACCAAAAGATGCAGTCAGTACTCGTACACGGTGCCGCTTTCTTTGCCGCCATCAGACG
CTGGCATGCACAGAAGCATCGCCCGATTCGCCTAGCACTAGTTGCTAGAGACACACGCTG
AGTCCACATCGTGGTGTAGGCTCATCGCTGAACCATCCAGTCCATCCCAGGTACACTGTA
AGTTTGCATCCATAATAAATCAAGATCCAAACTATGGCGCCAGAGGGCCACAACACTACA
TTTTCTTCCTGCGTCTGAATCTAATCAAACGAGCAAAAATATACTGCTGAGACTCAATGG
ATGATCTGAAGCACCCAAAAGAAGTAGAGGACAGGTCAAGAGCAGGGAACAAGAAGCTTC
GATTATCATTGATGTTATGTGTGATCAATAAAAACTTGTGCTTCTCATTCAATCTTTGTT
GAACTATGTTGATGTGTGATTATGCACTTGTCGGATCCTTTTGTTGTGCACCTGCACTTG
TAGAACTATTTTGTTGTGCACTTGTTGGGCCTTAAATCTTTATGTGTAGAGGAACCGATG
GATGATGTATTGTAATTCATGTGATGTGCTACTGAAATGAAACATAAAAAAAAAAAAAAA
AA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_27504.4	1042	0.0	1 - 1042	100	1042 / 1042	CUST_26441_PI390587928	ABC05376 ABC05377
MLOC_27504.6	1190	8e-82	1 - 170	99	169 / 170	CUST_26441_PI390587928	ABC05376 ABC05377
MLOC_27504.5	915	3e-81	1 - 165	100	165 / 165	None	ABC05376 ABC05377
MLOC_27504.7	1072	3e-150	67 - 355	100	289 / 289	CUST_26441_PI390587928	ABC05376 ABC05377
MLOC_27504.3	1075	2e-68	217 - 358	100	142 / 142	None	ABC05376 ABC05377
MLOC_27504.2	1240	0.0	18 - 523	100	506 / 506	CUST_26441_PI390587928	ABC05376 ABC05377
MLOC_17787.3	2067	0.0	713 - 1279	92	533 / 578	CUST_40779_PI390587928	ABC05376 ABC05377 ABC49964
MLOC_17787.1	2634	0.0	661 - 1227	92	533 / 578	CUST_40779_PI390587928	ABC05376 ABC05377 ABC16828 ABC49964
AK355082	1873	0.0	474 - 1039	92	532 / 577	CUST_40779_PI390587928 CUST_26440_PI390587928	ABC05376 ABC05377 ABC16828 ABC49964
MLOC_27504.1	2020	2e-112	585 - 809	99	224 / 225	CUST_40025_PI390587928 CUST_26441_PI390587928	ABC05376 ABC05377
MLOC_17787.2	2241	0.0	866 - 1304	93	417 / 450	CUST_40779_PI390587928	ABC05376 ABC05377 ABC16828 ABC49964
MLOC_26796.1	405	7e-142	75 - 405	94	312 / 331	CUST_19848_PI390587928	ABC05376 ABC05377
MLOC_46569.1	543	3e-141	240 - 543	97	294 / 304	None	ABC05377
MLOC_46570.1	444	7e-137	153 - 444	97	283 / 292	None	ABC05377
AK249808.1	1004	4e-110	646 - 937	91	267 / 292	None	ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC46208
MLOC_75318.1	399	4e-105	119 - 398	91	256 / 280	CUST_21288_PI390587928 CUST_35249_PI390587928	ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC47321
AK249969.1	1057	1e-104	733 - 1020	91	262 / 289	None	ABC05377 ABC13191 ABC16434 ABC18776 ABC38369 ABC40626
AK251926.1	1428	1e-100	1097 - 1387	90	262 / 292	CUST_31687_PI390587928 CUST_31686_PI390587928 CUST_1960_PI390587928 CUST_35249_PI390587928 CUST_19680_PI390587928	ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC46208 ABC47321
AK375894	999	4e-100	707 - 992	90	258 / 287	CUST_35249_PI390587928 CUST_19680_PI390587928	ABC05377 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC47321
MLOC_46569.2	1605	5e-99	234 - 458	96	216 / 225	CUST_40025_PI390587928	ABC05377
MLOC_27504.8	192	1e-84	1 - 192	97	186 / 192	None	ABC05376 ABC05377
AK252837.1	2740	6e-78	38 - 275	89	216 / 243	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_49282.1	675	8e-72	1 - 216	89	196 / 219	None	ABC05377
MLOC_49282.2	570	5e-69	1 - 211	89	191 / 214	None	ABC05377
MLOC_2837.3	1547	6e-68	1 - 200	90	183 / 203	None	ABC05173 ABC05377
MLOC_2837.4	1309	6e-68	1 - 200	90	183 / 203	None	ABC05173 ABC05377
MLOC_2837.5	2875	6e-68	1 - 200	90	183 / 203	None	ABC05173 ABC05377
MLOC_2837.1	2706	6e-68	1 - 200	90	183 / 203	None	ABC05173 ABC05377
MLOC_2837.2	1631	6e-68	1 - 200	90	183 / 203	None	ABC05173 ABC05377
MLOC_2837.6	2024	2e-67	1 - 199	90	182 / 202	None	ABC05173 ABC05377
MLOC_2837.7	976	2e-67	1 - 199	90	182 / 202	None	ABC05173 ABC05377
MLOC_9255.1	199	3e-66	14 - 199	91	171 / 187	None	ABC05377
MLOC_2837.8	1284	3e-66	1 - 197	90	180 / 200	None	ABC05173 ABC05377
AK359875	1896	2e-62	1646 - 1815	92	157 / 170	CUST_35249_PI390587928	ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC24067 ABC30713 ABC40626 ABC46208
MLOC_40634.1	1621	4e-60	853 - 985	98	131 / 133	None	ABC05377 ABC38116
MLOC_28185.1	696	4e-60	330 - 462	98	131 / 133	None	ABC05377
AK376402	3395	4e-55	3165 - 3298	96	129 / 134	CUST_27728_PI390587928 CUST_11078_PI390587928	ABC05377 ABC38116
MLOC_5141.11	4904	4e-55	2710 - 2843	96	129 / 134	CUST_27728_PI390587928 CUST_11078_PI390587928	ABC05377 ABC38116
MLOC_5141.6	2418	4e-55	2260 - 2393	96	129 / 134	CUST_27728_PI390587928 CUST_11078_PI390587928	ABC05377 ABC38116
MLOC_5141.8	3786	4e-55	3176 - 3309	96	129 / 134	CUST_27728_PI390587928 CUST_28116_PI390587928 CUST_11078_PI390587928	ABC05377 ABC38116
MLOC_5141.10	2959	4e-55	2349 - 2482	96	129 / 134	CUST_27728_PI390587928 CUST_11078_PI390587928	ABC05377 ABC38116
MLOC_5141.12	5459	4e-55	3265 - 3398	96	129 / 134	CUST_27728_PI390587928 CUST_28116_PI390587928 CUST_11078_PI390587928	ABC05377 ABC38116
MLOC_5141.1	4158	4e-55	2800 - 2933	96	129 / 134	CUST_27728_PI390587928 CUST_11078_PI390587928	ABC05377 ABC38116
AK359798	2572	6e-53	2401 - 2572	89	154 / 173	CUST_1960_PI390587928	ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC21257 ABC30713 ABC47321