barSeed - Barley Seed Development Database

Probe ABC16828

Source Contig ABC16828

barSeed

Links

Affymetrix Source Sequence (938 bp)

>ABC16828 938
GTTGAGTGGCCTCCTGGAGGATCACAAGGTGAGCTGTTCCATTGTACATGGTGGAGACCT
GGACCCAAAGACCTTGAGCATCGAGCCCACCATACTGCTCAATCCACCACTCGACTCTGA
TGTCATGACAGAGGAGATTTTTGGCCCTCTCCTCCCGATCATCACGGTGAAGAAGATCGA
GGACAGCATCGAGTTCGTGAACTCCAGGCCCAAACCGCTCGCGATTTACGCCTTCACCAC
GAGCGAGGCGCTGAAGCAGCAGATCATCAAGGAAACATCGTCCGGGAGCGTCACCTTCAA
CGACGCAATTGTGCAGTACGGGCTGGAGAGCATCCCGTTTGGCGGCGTCGGGCAGAGCGG
GTTCGGGCAGTACCACGGCAAGTACTCATTCGAGATGTTCAGCCACAAGAAGGCGGTGTT
CAGGAGAAGCTTCCTGGTGGAGTTCATGTTCAGATACCCGCCGTGGAACGACGAAAGCAA
ACTCGGGTTGCTGCGGCACGTCTTCCGCTATGACTACGTGTCGCTGGTCCTCGCTCTGCT
CGGCCTGAGGAGGTGAACGGGGAAGACGCTGCCGGCGAAGCTGGAGAAACTGCACTCGCC
GTTGCGTGTAGTCAATCATGCTCGATGGCTATCCCATGGCTTTACACGGGTTGATGAATG
TATGTTGTCGCCCTAGGTATATACTTAAGCATTCGAACTGCCGTGTCCCATTCTAAAGAT
TTCTGGAGCATCACGCATCCCTATCAGTATATTGCACCAACAGTTTCATGGTCTTGTACT
TTTACTTATTTTATAAATCTGGACCTGGAAGGCAGAATCCTGGATTTTATTGTTTCAAAA
AGCTAGTACATGACTAAGCATAAGCTTAGATGGTTAGATTTTCTTATGATAGANACCAAT
CCCATGTGGGTTCAATCTTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK365254	1774	0.0	938 - 1773	99	835 / 836	CUST_5387_PI390587928	ABC05376 ABC16828
MLOC_77136.1	1767	0.0	1 - 790	100	790 / 790	None	ABC05376 ABC16828
MLOC_77136.2	1089	0.0	1 - 486	100	486 / 486	None	ABC05376 ABC16828
MLOC_17787.2	2241	4e-97	174 - 611	81	361 / 443	CUST_40779_PI390587928	ABC05376 ABC05377 ABC16828 ABC49964
MLOC_17787.1	2634	4e-97	187 - 624	81	361 / 443	CUST_40779_PI390587928	ABC05376 ABC05377 ABC16828 ABC49964
AK355082	1873	2e-95	1076 - 1513	81	360 / 443	CUST_40779_PI390587928 CUST_26440_PI390587928	ABC05376 ABC05377 ABC16828 ABC49964