barSeed - Barley Seed Development Database

Probe CUST_26440_PI390587928

Source Contig U35_15014

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26440_PI390587928	Hv_44K_v2	GGGAAAAAACACGGATCTTCACATAAGATCTTACGAATAAAGCATTGATTGAGGTTTAGT	1814	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.851	6.100	1.181	0.832	0.349	0.650
Raw	145.158	212.131	34.988	42.719	4.673	11.630

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355082	1873	7e-23	1816 - 1872	100	57 / 57	plus	ABC05376 ABC05377 ABC16828 ABC49964
JLOC1	JLOC1_12284.1	2259	4e-23	2037 - 2093	100	57 / 57	plus
Harvest35	U35_15014	1917	3e-25	1815 - 1874	100	60 / 60	plus

Contig Sequence (1917 bp)

>U35_15014 1917 Hv_44K_v2
GAGCCGTCACTTCCTTGCTCACATTCACAGTGGAGCAGCGGAGCAGAGCAGAGCGAGTGA
GGCCGAGAGCATGGGCACAATGGCGACCAGCGTGGAGGAGATCGGCGCGGCGGTGGAGCT
GCCCGCGCTGCAGCGCCGCCTGGGCGAGCTGCGGGCGACCTTCGAGGGCGGCAGGACCCG
GCCCCTGTCGTGGCGGCAGTCCCAGCTGCGCGCCCTCCTCCGGCTCCTCGCCGACAAGGA
GGAGGAGGCCTTCCGCGCGCTCCACGCCGACCTCGGCAAGCACCGCGCCGAGGCCTACAG
AGACGAGGTCGGCGTGCTCACCAAGTCTGCCAACGCCGCGCTGCGGGAGATGGGGAAATG
GGCGGCGCCGGAGAAGGTCTGGGCGCCGCTGGCGGCGTTCCCGGCGAGCGCGCATGTCGT
GCCGGAGCCGCTCGGGGTCGTCCTCATCTTCTCCTGCTGGAACTTCCCCGTGCACAGGTC
TGTCTTTGGAGCCGCTGATCGGGGCCATAGCGGCGGGGAACGCCGTGGCGCTGAAGCCGT
CGGAGCTGGCGCCGGCGACGGCCAGGTTCCTGGAGGAGAACATAGGCGAGTACCTGGACG
CCACGGCGGTGAAGGTCATCCAGGGCGGCCCCGCGGTGGGCGAGCAGCTCATGGAGCACA
GATGGGACAAGGTCCTCTTCACCGGGTGCCCGCGCGTGGCGCGCGTGGTGATGGCGGCGG
CGGCGAAGCACCTGACGCCGGTGGCGCTGGAGCTGGGCGGGAAGTGCCCCTGCATCTTCG
ACGCCGTTGCCGGCAGGAGGAACCTCCAGTCCTCGGTGAACCGCGTGATCTTCGCCAAGT
GGTCGTCCTGCGCCGGCCAGGCCTGCATCGCCATCGACTACGTGCTCGTCGAGGAGCGAT
TCGCGCCCACCCTGATCAAGTTGCTCAAGTCGACGCTCAAGAGGTTCATCGCCGACTCGG
ACCAGATGGCGCGGATCGTCAACGCGCGGCATTTCCAGCGGCTGAGTAACCTCCTCAAGG
ACCCGGCGGTGGCGGCATCCATCCTGCACGGCGGCAACTTAGACGCCAAGAACCTGTCCA
TCGATCCCACGATACTGCTGAACCCGCCGCTGGACTCGGCGATCATGACCGAGGAGATCT
TCGGCCCTCTGCTCCCCATCATCACGGTGAAGAAGATCGAGGACAGCATCGCGTTCGTGA
GGGCGCGGCCGAAGCCGCTGGCGGTGTACGCCTTCACCGACAGCGCGCCGCTGAAGCGCC
GGATCGTGGAGGAGACGTCGTCGGGGAGCGTCACCTTCAACGACGCCGTCGTGCAATTCG
GGATCGACTCGCTGCCGTTCGGCGGCGTGGGGCAGAGCGGGTTCGGGCAGTACCACGGCA
AGTACTCCTTCGAGATGTTCAGCCACAAGAAGGCGGTGCTGCGGCGGGGGTTCCTGGTGG
AGGCCATGCTGAGGTACCCGCCGTGGGACGAGCAGAAGATCGCCATGATGCGCCACCTCT
ACCGCTACGACTACGTCCGCTTCATCTTCACCTTCCTCGGCCTGTGGAAATGATGGCGCG
GCTGGATGGGTTTGCCCCCAGGAAATTAATTAATTATTATTTATTTGGTGAATGAGTGGA
TGAACAGGTACATGAATAAGCATACCACGTTAGTTTGTAAGGGGTGTGTAGCGGGCTTCA
CTCGGTACTTGCTAGTGTGCCAATAATACAAGAATGTTCTGTTTTCAAAAAAAAAAAAAA
AAAGTACTATAGTCTTAAGAGGTGTGGTTAGACCTCACTCGACTGGTCAAGTCACATAAT
ATAGAAAAAGGAAGGGGAAAAAACACGGATCTTCACATAAGATCTTACGAATAAAGCATT
GATTGAGGTTTAGTTAAATCTTAATCAACTGAGATTTAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15014 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45720.1	500	0.0	protein\|aldehyde dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi5g17110.1	496	0.0
Arabidopsis v10	AT4G36250.1	484	8e-134	\| Symbols: ALDH3F1 \| aldehyde dehydrogenase 3F1 \| chr4:17151029-17153381 FORWARD LENGTH=484