barSeed - Barley Seed Development Database

Probe CUST_40779_PI390587928

Source Contig U35_48320

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40779_PI390587928	Hv_44K_v2	ATGAACAGGTACATGAATAAGCATACCACGTTAGTTTGTAAGGGGTGTGTAGCGGGCTTG	-1	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.702	4.486	1.180	0.751	0.354	0.607
Raw	1246.343	1590.468	361.491	396.444	58.523	112.487

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355082	1873	2e-24	1617 - 1676	100	60 / 60	plus	ABC05376 ABC05377 ABC16828 ABC49964
MLOC	MLOC_17787.2	2241	2e-24	11 - 70	100	60 / 60	minus	ABC05376 ABC05377 ABC16828 ABC49964
MLOC	MLOC_17787.1	2634	2e-24	24 - 83	100	60 / 60	minus	ABC05376 ABC05377 ABC16828 ABC49964
MLOC	MLOC_17787.3	2067	7e-23	1 - 57	100	57 / 57	minus	ABC05376 ABC05377 ABC49964
JLOC1	JLOC1_12284.1	2259	8e-25	1838 - 1897	100	60 / 60	plus
Harvest21	ABC05376	1362	3e-25	1152 - 1211	100	60 / 60	plus	ABC05376
Harvest21	ABC49964	624	1e-23	37 - 97	98	60 / 61	minus	ABC49964
Harvest35	U35_15014	1917	1e-24	1620 - 1678	100	59 / 59	plus
Harvest35	U35_48320	624	1e-23	37 - 97	98	60 / 61	minus

Contig Sequence (624 bp)

>U35_48320 624 Hv_44K_v2
TCTTGTATTATTGGCACACTAGCAAGGTACCGAGTGCAAGCCCGCTACNACACCCCTTAC
AAACTAACGTGGTATGCTTATTCATGTACCTGTTCATCCACTCATTCACCAAATAAATAA
TAATTAATTAATTTCCTGGGGGCAAACCCATCCAGCCGCGCCACCATTTCCACAGGCCGA
GGAAGGTGAAGATGAAGCGGACGTAGTCGTAGCGGTAGAGGTGGCGCATCATGGCGATCT
TCGGGGTCATTTACTTTAGTTTAGCCTCTCATGACAGCATCAAGAGACATCATCCAGTCT
AGTATATGTATGTGTCTGGGAGCACTTATTAACATTATATGAACAAGTAAAAAAGAAATT
CACATGCTTCCGGTACGATTTCTTATTTCATCCTCAAGAAGAAAAAACTCCTCCCCATGC
GCCGGCCGGCGGTCTAGAGTTTGGACGACTGCTCAACCCCGGGATATTCTTTGCGCCATG
TCTTGTGGATGTGTGTTACCACGAAACCCCCGGGGTTTTCAGGCTTTACACTCAGCGCAA
GAGTTGTAAAACAGCACACCCACGCATCACCTTCTGCCTCCCACAAGTCGAATCTCACGA
GCCAACTGTCAGAAGCAGTCTGCA

Homology of Contig U35_48320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None