barSeed - Barley Seed Development Database

Probe ABC30713

Source Contig ABC30713

barSeed

Links

Affymetrix Source Sequence (571 bp)

>ABC30713 571
GGCATCTTGACGCATATGGCAAGCAAGGTCCGGTGGAACAGCTCCAGCAGGAGGCAAACA
ACGGCGTTCTTCTTCGTCGTGGGATCCTAAAAAGTAGTCTGGCATGAAGCTGTGACATGC
TCATGTATGTGCCCTGCACCAACAGCAGCTACACTCCTAAGGGGATGAAATCGAACAAAA
GAGCAGAGATGGAAACATGGAGTGTACATTTCCAGCTATAAAGGATCCAGCTCAGTTGGT
GGTTTCACATGCAAAGTCGAGTAAGGATGTTCTAAAGCACCCAGAAGAAGTAGAGGACAG
GACAGGAGGAGGGAACAAGAAGCTTCGTTTATCATTGATGTTATATGTGATCAACAAAAA
CTTGTGCTTCTCATCCATTTTTTGTCGAACTATGTTGATGTGTGGTTATGCACTTGTCTG
GCCCTTTTGTTGTGCACCTGTACTTTAGAACTATTTTGTTGTGTACTTGTTGGGCCTTGA
ATCTTTATGTGTAGAGCAGTCGATGGATGATGTATTGTAATTCATGTGATGTGTTACTGA
AATGAAATATATACAAGTAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK375894	999	5e-164	631 - 997	95	351 / 369	CUST_35249_PI390587928 CUST_19680_PI390587928	ABC05377 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC47321
AK249808.1	1004	6e-114	648 - 946	92	274 / 299	None	ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC46208
MLOC_75318.1	399	7e-108	121 - 399	92	257 / 279	CUST_21288_PI390587928 CUST_35249_PI390587928	ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC47321
AK251926.1	1428	1e-101	1104 - 1396	90	263 / 293	CUST_31687_PI390587928 CUST_31686_PI390587928 CUST_1960_PI390587928 CUST_35249_PI390587928 CUST_19680_PI390587928	ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC46208 ABC47321
MLOC_47032.2	567	6e-79	335 - 515	96	174 / 181	CUST_40854_PI390587928	ABC30713
MLOC_47032.1	341	6e-79	84 - 264	96	174 / 181	None	ABC30713
MLOC_46135.2	564	6e-79	329 - 509	96	174 / 181	CUST_40854_PI390587928	ABC30713
MLOC_46135.1	318	6e-79	84 - 264	96	174 / 181	None	ABC30713
AK359875	1896	2e-58	1645 - 1815	91	155 / 171	CUST_35249_PI390587928	ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC24067 ABC30713 ABC40626 ABC46208
AK370687	543	6e-54	301 - 451	92	140 / 152	CUST_31687_PI390587928 CUST_31686_PI390587928 CUST_35249_PI390587928	ABC08513 ABC13191 ABC18776 ABC21257 ABC21343 ABC30713
MLOC_76565.4	844	2e-53	707 - 844	94	130 / 138	None	ABC13191 ABC18776 ABC21257 ABC30713
MLOC_76565.2	1106	2e-53	969 - 1106	94	130 / 138	None	ABC13191 ABC18776 ABC21257 ABC30713
AK359798	2572	8e-53	2408 - 2572	90	148 / 165	CUST_1960_PI390587928	ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC21257 ABC30713 ABC47321
MLOC_76565.8	951	8e-53	815 - 951	94	129 / 137	None	ABC13191 ABC16434 ABC18776 ABC21257 ABC30713
MLOC_76565.3	646	1e-51	512 - 646	94	127 / 135	CUST_36457_PI390587928	ABC13191 ABC18776 ABC21257 ABC30713