barSeed - Barley Seed Development Database

Probe CUST_28116_PI390587928

Source Contig U35_42445

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28116_PI390587928	Hv_44K_v2	TATGTTCCATATCTACATGACATCATGTTAACCATCTTTCTCCAACAATTTTACGGCACC	25	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.010	1.113	1.429	1.176	0.499	0.716
Raw	51.925	90.111	100.081	132.340	20.294	30.743

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5141.8	3786	2e-24	2023 - 2082	100	60 / 60	plus	ABC05377 ABC38116
MLOC	MLOC_5141.12	5459	2e-24	2023 - 2082	100	60 / 60	plus	ABC05377 ABC38116
JLOC1	JLOC1_3286.7	5076	8e-25	1809 - 1868	100	60 / 60	plus
JLOC1	JLOC1_3286.3	5291	8e-25	2024 - 2083	100	60 / 60	plus
JLOC1	JLOC1_3286.1	4841	8e-25	2024 - 2083	100	60 / 60	plus
Harvest21	ABC38116	642	3e-25	26 - 85	100	60 / 60	minus	ABC38116
Harvest35	U35_42445	642	3e-25	26 - 85	100	60 / 60	minus

Contig Sequence (642 bp)

>U35_42445 642 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAATAGCAGGTGCCGTAAAATTGTTGGAGAAAGATGGTTAACA
TGATGTCATGTAGATATGGAACATATCAGTGTACACAAACAATTGTGCATACAAAAGCAA
AGATTTACTTTGACATGAAAGATAGAGCTTACACTTCAAATGTTCGGGTATCTGCATCAG
ACTGTATACTTGAAGACTTGGTAGCCAATGAAGAGGTGCTTGTGGTATCACAAATATTGA
CTGCTGATGCTAAAACAGTATCACAACGTGATATTGAATCACTGTTCACATTATCATCAG
AAAGAAGAAACTTTGGTCGGTCAACTGGTTCACCACATCTGTCATCACTCCTGTTAACAT
CAAAAGCAGGGCAGCCGATTGGTTTTCTATCACTATTGTAGCTGATTAGCTTGGAGACAT
CATTACAGCTAGGTTTCCAAGAAGATGAAGATAACCGATCATGTACAGCTATGGTCTGTG
TCACATCAAGGGCAGGCTCATTCAGTTTCATGGAAACAACTACATTTGTATTCTGTAAAA
TCAATCCTGAGGTGTGTGTTCGACCTGTTGAGCTATGCATTAATTGCATGCCTGATGATC
CAAGGCTTCCAATTATTCCAGATCTGTCAGGGCTTTTGACTA

Homology of Contig U35_42445 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None