barSeed - Barley Seed Development Database

Probe ABC12988

Source Contig ABC12988

barSeed

Links

Affymetrix Source Sequence (1043 bp)

>ABC12988 1043
CCCTCTGTGCTCCCGTACGCCGCGACAGACCCGTGCGCTCCCTTCTCCACCTCTCTCGTC
AACCTGGATCTGTCCTCCCATCGTCTCCACCAAAGCCAAGCAAAGCAGAGGAACAGGAAT
CCCGGTTGAAGGATGACACAGGCGGCGCGGCCGACGTGGGCGTCGGCCAAGGGCGAGAAC
GAGCAGGGGGCACCCGCATCTTCGGGCCCTCCGGGAAGTATTCCTCCCGTGACCTTGCTG
CCCACACCTCCCTCAAGCCCAGGCACGATCCCCTGTGCCCCATGGAGAATGGCGACAAGG
TGGCGGCAGTAGTCACCATGGAAGAAGTCGCAAGAAGATCTACCACGTCGTCTCCATTCC
GGGATCTGTCGCCCGCGCCGCCGCCTCCCTGCCCTCTTTGCAGTTGCCGTCGTCCATTGC
CGCAGACGCCTCCTCCTCACTGGCGAGATGGTACGACCTCCCCTTACCGCGCTCCAGGAT
GCCAAGTTTCATCTTTCGCCACCTCCTGCCACTCATGGCGACCGCCGCGTCGCCCCCTCA
CCCACCACGCCCGGGACCCCATGGCGGCCCGTGTCCTGGTCCCCATGGCTACCGGCCTTT
TCCCCTCGCCCCCATGGCCGGCATCCCCATGGCGGCTGCTGCTGTGTACGTTGAAAAGGG
TGCTAAAGTAGACCTTCCATTTTGGCTTGCGCATGGAATGCTGTCTCTGGAACAAGCGGT
GTCAATAAATGTACCTCATTGCTTCACCCAGAAGCGGCAATGGCAAGAGCATATTGTGAA
GAGGAAGAGGATGAGAAGAAACGTGTGGTTCTCATTCAATCTTTGTGGAACTCTCTTTAT
GTGTGATTGTGCATTTGTTGGAACCTTTCTCTGTGCACTTGCACTTGCAGCAGTATTCTG
TTGTGCACATGTAAAATTATTTTGATGTGCCCTTGTTAGGCGTTGAACCTTAATGCGTGG
AGTCGGTGGATGATGTATTGTATTTGATGTAATATGCTACTGAAATGAAATATATATTTT
ATTTGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_32055.2	486	6e-176	1 - 486	91	440 / 486	None	ABC12988 ABC12989
MLOC_32055.1	592	4e-148	39 - 456	90	378 / 418	None	ABC12988 ABC12989
MLOC_26626.1	495	1e-132	160 - 422	99	261 / 263	None	ABC03898 ABC12988 ABC12989
MLOC_35655.1	729	2e-130	1 - 262	99	259 / 262	None	ABC12988 ABC12989
MLOC_35655.2	299	1e-123	1 - 250	99	247 / 250	None	ABC12988 ABC12989
AK249247.1	750	4e-118	460 - 747	93	269 / 288	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK374695	634	2e-111	361 - 634	93	256 / 274	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK250595.1	856	2e-110	586 - 856	93	253 / 271	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK365264	1315	8e-110	1041 - 1313	93	254 / 273	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK252837.1	2740	1e-102	2479 - 2740	92	250 / 271	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_30440.1	361	5e-102	92 - 355	92	251 / 273	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_28160.1	929	5e-102	448 - 721	91	250 / 274	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK362032	681	1e-98	411 - 678	91	244 / 268	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK359738	1264	4e-98	992 - 1264	90	247 / 273	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK366452	692	1e-97	427 - 692	91	242 / 266	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK370037	1546	6e-96	1293 - 1546	92	234 / 255	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_64313.1	278	2e-95	1 - 259	91	247 / 272	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_60076.1	511	8e-95	1 - 243	93	225 / 243	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_53920.2	753	2e-85	554 - 753	95	194 / 204	None	ABC12988 ABC12989 ABC25943
AK372031	1366	9e-85	1069 - 1308	90	217 / 240	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
MLOC_2713.1	924	1e-73	673 - 920	87	227 / 261	None	ABC12988 ABC34989 ABC43152
MLOC_2713.2	1452	1e-73	1201 - 1448	87	227 / 261	None	ABC12988 ABC34989 ABC43152
MLOC_7526.1	208	7e-71	9 - 208	91	182 / 200	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334
MLOC_33574.1	258	5e-67	77 - 258	92	173 / 188	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_73125.2	991	2e-66	132 - 318	91	176 / 193	None	ABC03898 ABC03899 ABC12988
AK250213.1	1079	7e-66	19 - 204	91	175 / 192	CUST_36881_PI390587928	ABC03898 ABC03899 ABC12988
MLOC_73125.3	347	7e-66	129 - 314	91	175 / 192	None	ABC03898 ABC03899 ABC12988
MLOC_73125.1	577	7e-66	132 - 317	91	175 / 192	None	ABC03898 ABC03899 ABC12988
MLOC_7574.1	193	9e-60	1 - 183	90	164 / 183	CUST_2502_PI390587928	ABC05171 ABC12988 ABC13209 ABC19962 ABC30081 ABC30943 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569
MLOC_81791.1	171	1e-58	5 - 171	92	153 / 167	CUST_30308_PI390587928	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
AK250846.1	2265	2e-55	2124 - 2265	94	134 / 142	CUST_2110_PI390587928 CUST_8718_PI390587928 CUST_2499_PI390587928	ABC01497 ABC05171 ABC07805 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC50849
MLOC_58288.1	152	3e-54	1 - 152	92	140 / 152	CUST_8721_PI390587928	ABC01497 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC34978 ABC34989 ABC38349 ABC43152 ABC46334
MLOC_29781.1	258	7e-51	1 - 149	91	136 / 149	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC33341 ABC34989 ABC38349 ABC44562 ABC46334