barSeed - Barley Seed Development Database

Probe ABC46334

Source Contig ABC46334

barSeed

Links

Affymetrix Source Sequence (606 bp)

>ABC46334 606
CGAAAGGTAGTTTCATGATATGTATATTTGATATTGTAGATGTTGATATTTTTCAATATA
TATTTGGTCAAACTTTGTAAAGTTTGACTTGACCCAAGTCTAATATGCGGAGTAAAAAGG
ACCGGAGGGAGTACATAAAAAGGGGTATGGTAAAATAATTATATATATATATAATACTTT
TTATGACCTCATAAGTCATAACTAGATAGAATGAGAAAACAATTTTCTATTGTTTTATCA
TTGGTTATCGTGCATACAATTATACTAGTTTCCTTGGTCTGAAAGCATTACCATCATTTT
CTTCTTGTAGGCGGCAATGGCAAGAGCATATTGTGCAGAGAAAGAGGATGAGAAGAAACT
TGGGGTTCTCATCCGATCTTTGTGGAACTCTCTTTATGTGCGATTGTGCACTTGTTGGGT
CCCCCCTCTGTGTACTTGCACTTATAGTAGTATTCTATTGTGCACATGTAAAATTATTTT
GATGTGTCCTTGTTAGGCGTTGAACCTTAATGCGTGGAGTCGGTGGATGATGTATTGTAT
TTAATGAGATATGTTACTGAAATGAAATATACTCTTCCCCCCCCCCCCAAAAAAAAAAAA
ACTCGA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_28160.1	929	0.0	265 - 705	95	421 / 442	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK359738	1264	2e-119	895 - 1253	88	317 / 359	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK362032	681	2e-118	411 - 665	97	247 / 255	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	2e-118	427 - 681	97	247 / 255	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK372031	1366	5e-110	1069 - 1311	96	234 / 243	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
MLOC_30440.1	361	5e-110	5 - 342	88	306 / 347	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_78323.1	239	2e-103	1 - 239	95	230 / 242	None	ABC19962 ABC34978 ABC34989 ABC44562 ABC44566 ABC46334 ABC49963
AK249247.1	750	8e-103	460 - 719	93	241 / 260	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_61318.1	383	1e-101	1 - 383	86	330 / 384	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
AK250595.1	856	2e-98	582 - 845	91	241 / 264	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_60076.1	511	2e-98	1 - 261	92	239 / 261	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK374695	634	1e-96	359 - 623	91	241 / 265	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK365264	1315	4e-96	1043 - 1302	91	237 / 260	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_33574.1	258	8e-88	1 - 258	89	236 / 264	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_7526.1	208	6e-84	22 - 208	97	181 / 187	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334
AK370037	1546	2e-83	1293 - 1535	90	219 / 244	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_591.1	166	1e-80	1 - 166	99	165 / 166	None	ABC19962 ABC34978 ABC34989 ABC44562 ABC44566 ABC46334 ABC49963
AK371668	1529	8e-73	1269 - 1518	87	217 / 250	None	ABC05172 ABC06188 ABC13360 ABC17513 ABC21924 ABC24067 ABC34989 ABC46334
MLOC_29781.1	258	8e-68	1 - 152	97	148 / 152	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC33341 ABC34989 ABC38349 ABC44562 ABC46334
MLOC_58288.1	152	4e-66	7 - 152	98	143 / 146	CUST_8721_PI390587928	ABC01497 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC34978 ABC34989 ABC38349 ABC43152 ABC46334
MLOC_669.1	946	1e-61	794 - 946	95	146 / 154	None	ABC34978 ABC34989 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_1753.1	3578	4e-61	3308 - 3471	93	153 / 165	CUST_15698_PI390587928 CUST_8718_PI390587928 CUST_20789_PI390587928 CUST_18870_PI390587928	ABC05172 ABC12127 ABC12128 ABC30081 ABC34978 ABC34989 ABC44562 ABC46334 ABC49963
MLOC_35304.3	1560	2e-59	22 - 185	92	151 / 164	None	ABC05172 ABC13209 ABC19962 ABC30081 ABC34978 ABC34989 ABC43152 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_35304.4	1555	2e-59	22 - 185	92	151 / 164	None	ABC05172 ABC13209 ABC19962 ABC30081 ABC34978 ABC34989 ABC43152 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_1624.1	232	4e-56	1 - 217	85	185 / 217	None	ABC01497 ABC05172 ABC06188 ABC12128 ABC13360 ABC16799 ABC17513 ABC21924 ABC24067 ABC33341 ABC38349 ABC46334
AK362235	3729	7e-54	867 - 999	96	128 / 134	CUST_33229_PI390587928	ABC15204 ABC15859 ABC46334