barSeed - Barley Seed Development Database

Probe ABC15204

Source Contig ABC15204

barSeed

Links

Affymetrix Source Sequence (1213 bp)

>ABC15204 1213
CACGAGCAGTAGCACTCATGGAAGGAGCCATCTCCAGCCGGCCAAACACAAGGTTAGCAT
GACTACCTAGGCATTCTTAGCTCTTTAGGCCACCATGCAGGCTTGCCTCGAAGCAGTATT
GCTCTGATCTGCGGCGCGTGGTTGCTAGGGTCGCCGTCGTCACCGGCGGGAACAAGGGGA
TCGGCTTCGAGGTGTGCCGGCAATTAGCCGTCGATGGAGGAGTGACGGTCGTCCTGACGG
CCCGGGACGAGGCGAGGGGCGCGGAGGCGGCGGAGAGGCTCAGAGCGCTGGGTGTCACCG
ACGCCGTCTTCCATCAGCTGGACATCACGGACGCCTCCAGCATCGCTACGCTAGTCTACT
TCCTCGACACCCGTTTCGGCAAGCTCGACATCCTGGTCAATAATGCCGGTGTTGGAGGGG
TTGAGTACCCGCAAGAACTCGAAGCCAACGACGGTCAGTTCGCCGGCCTGGACTCGAAGC
AGAGACTTGAATGGATGGTGAAGAATGTCCGGGAGCCCATCGACGCCGCAAGGAAAGCCG
TGGAGACAAACTACTACGGCACCAAGCATGTAACCCAAGCCCTGCTGCCGCTGCTGCAAT
CTTCCAAGGAGGGAAGGATTGTGACTGTCTCCTCCGAATACGGACTGCTAAGGCTTATCA
GCAACGAGGAGGCGAGGCGGGACCTCAACGACATCGACAACCTGACGGAGGAGAGGCTGG
ACGAGCTGCTGGGCAAGTTCCTGAATGACTTCGAGGAGGGCGACGCGCTGGAGACGCACG
GGTGGCCCACGGGGTTCTCGGCGTACAAGGTGGCCATGGCCGCCACCAACGCCTACTCGA
GGATCTTGGCCAGGAGGCACCCCATGCTGCGCGTCAACTGCGCGCATCCGGGCTACGTCA
AGACGGACATGAGCATGGGCTCGGGTGTCCTGACGCCCGAGGAGGGAGCGCAGCGCGTGG
TGATGGTGGCGCTGCTGCCGGACGGCGGCCCGACCGGCAAGTACTTCACCAAGGGCGAGG
AGGCGTCGTTCGTGTGAGCTATGTTACGATGGTTTGAGATTTTGAGTAGTACTTCCTCCG
GTCCTTTTTAGTCTGCATATTAGCTTTGTCCGAAATCAAAGTATCTCTACTTTGACCAAA
TTTATAAAAACATGTATCAACATTCACAATGTCAAATTAATATTGTTAGATTCATTAAAA
AAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_10502.1	1316	0.0	1 - 1069	100	1069 / 1069	None	ABC13529 ABC14123 ABC15204 ABC40642
MLOC_10502.3	900	0.0	151 - 803	100	653 / 653	None	ABC15204 ABC40642
MLOC_10502.2	693	0.0	1 - 573	100	573 / 573	None	ABC15204
MLOC_44772.2	1321	0.0	297 - 1176	84	748 / 888	CUST_38127_PI390587928 CUST_30427_PI390587928	ABC14123 ABC15204 ABC40642
AK357257	1136	0.0	81 - 960	84	745 / 889	CUST_38127_PI390587928	ABC14123 ABC15204 ABC40642
MLOC_44772.1	1155	3e-179	310 - 1010	83	586 / 707	CUST_38127_PI390587928 CUST_30427_PI390587928	ABC14123 ABC15204
MLOC_44772.3	1443	2e-61	1007 - 1248	84	207 / 245	None	ABC14123 ABC15204 ABC40642
MLOC_44772.4	1153	3e-60	809 - 1048	84	205 / 243	None	ABC14123 ABC15204 ABC40642
MLOC_43498.1	1280	3e-105	112 - 608	81	405 / 502	None	ABC13529 ABC15204 ABC40642
AK362235	3729	8e-51	1000 - 1127	95	122 / 128	CUST_33229_PI390587928	ABC15204 ABC15859 ABC46334