barSeed - Barley Seed Development Database

Probe ABC33341

Source Contig ABC33341

barSeed

Links

Affymetrix Source Sequence (709 bp)

>ABC33341 709
GCTAGCGTGACCGGTTTAATATTGTCATGTATTTAATTCAACTATTTCTTGATCAGTATG
TGTGGTTCTCTTACTGCATGAGTAACCTTATTCATAGCAATCTTCATTCTTTAGGTGAAA
GCAACCTGGTATTCTATCGTCAGCCAACTACATGAGTAACATTGATTATTTAGCTGACTA
CACAAGTAATTTACTTTTTCTCATCTTATGATGCTCGGAGCAATGCTTGGTTAGTACTAG
CCTCCAGTTTGATTTATTTGCATTTCAAAGGGCTGGATATTGACCCTCTTCTTGGCATCA
ATTGTTGTTGGCTTTTTAATTATTTATCCTTTTGTTTTGTTACAGTGTGATGAAGCTTAC
TCGCGCAACCTATTCACATATGTACTGTAGCTGTTGAAGCAAAAGTTATCTGCACAGACG
GCAATGGCAAGAGCATATTGTGCGGAGAAAGAGGATGAGAAGAAACTTGTGGTTCTCATC
CCATCTTTGTGGAACTCTCTTTTTGTGCGATTGTGCACTTGTTGGGTCCTTTTTCTGTGC
ACTTGCACTTGTAGAAGTATTCTGTTGTGCACATGTAAAATTATGTTGATGTGCCCTTGT
TAGGCGTTGAACCTTAATGCGTGGAGTCGGTGGATGATGTAATGTATTTGATCTGAATAT
GCTACTGAAATGANAATATATATTCTATTTGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249247.1	750	0.0	386 - 747	99	362 / 364	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_2874.1	319	3e-162	1 - 319	99	316 / 319	None	ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC16799 ABC30081 ABC33341
AK250595.1	856	2e-109	586 - 856	93	254 / 273	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_28160.1	929	3e-108	444 - 721	92	258 / 280	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK365264	1315	3e-107	1044 - 1313	93	252 / 272	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK374695	634	1e-106	362 - 634	92	254 / 275	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK362032	681	9e-103	411 - 678	92	248 / 270	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	1e-101	427 - 692	92	246 / 268	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK359738	1264	1e-96	993 - 1264	90	247 / 274	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_60076.1	511	1e-96	1 - 246	93	229 / 247	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK370037	1546	6e-95	1293 - 1546	91	235 / 257	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK372031	1366	3e-92	1069 - 1297	93	214 / 229	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
AK252837.1	2740	1e-91	2479 - 2740	90	245 / 273	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_30440.1	361	4e-91	92 - 355	89	246 / 275	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_64313.1	278	9e-88	1 - 259	89	244 / 274	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_2874.2	1593	1e-67	1454 - 1593	100	140 / 140	CUST_2527_PI390587928	ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC16799 ABC19962 ABC30081 ABC33341 ABC34978 ABC38349 ABC44562 ABC44566 ABC49963
MLOC_41697.1	1465	1e-81	1301 - 1465	100	165 / 165	CUST_4385_PI390587928 CUST_40835_PI390587928	ABC11624 ABC11625 ABC16799 ABC33341 ABC37734 ABC44428
MLOC_61318.1	383	7e-79	185 - 383	93	186 / 199	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
MLOC_7526.1	208	1e-71	9 - 208	91	184 / 202	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334
MLOC_1624.1	232	8e-64	1 - 230	86	200 / 232	None	ABC01497 ABC05172 ABC06188 ABC12128 ABC13360 ABC16799 ABC17513 ABC21924 ABC24067 ABC33341 ABC38349 ABC46334
MLOC_46057.1	201	8e-59	1 - 136	97	132 / 136	CUST_15317_PI390587928	ABC16799 ABC33341
MLOC_33574.1	258	8e-59	74 - 258	89	170 / 191	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_78194.1	127	2e-55	1 - 127	98	124 / 127	None	ABC05171 ABC05174 ABC12127 ABC12128 ABC13836 ABC16799 ABC30081 ABC33341 ABC38349
MLOC_29781.1	258	6e-55	1 - 138	95	131 / 138	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC33341 ABC34989 ABC38349 ABC44562 ABC46334
AK250846.1	2265	5e-51	2124 - 2265	92	133 / 144	CUST_2110_PI390587928 CUST_8718_PI390587928 CUST_2499_PI390587928	ABC01497 ABC05171 ABC07805 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC50849