barSeed - Barley Seed Development Database

Probe ABC12127

Source Contig ABC12127

barSeed

Links

Affymetrix Source Sequence (1661 bp)

>ABC12127 1661
GAGAATTTGCACTAAGACTAGAGGGTAGGCTTGTTTTTATTGTAGATCTATAGTAGAGTA
TAACACTTAAATTTTCGAGTATGTGACTTGTATGCTTGTTGTATGTGCTTTCACTCGCAT
GTTATTAGAGCATATGCTTGTTCTGTATCATTGATCCATGGCATATAGTAATTCATATGG
TTCACACATAAAACTTGCAGCAGAAAATCATTCTAAATGTTTATCCTTTGTAAACACTTA
CCAAACTTCTTTGCTAGGATAGAAAAAAAGCCCATTGATAATCAGTAGTCATGGTGGACA
CCGGGAAGCAAATAAGCAACAAACTAATAGAAAAAATATATGATAATTTGCATGTGTGAC
TTCCCTTATCCCTTCCATCTAGGAAGTATCTGTTACTGTCAGCTTTGGAACAAGTATGGA
AGTATATATAAACACCTTTCACATGATTTTTCCATCAGAAGTAATATATGCTACTATACT
CATCCATACATGAACATGAATGTGAAACATACTAGTACATGTCTCGATCTGCACTCGCCC
TTACGAAATATGGATATATATTCTTTTTCCAGTGAAATTATTTATTATAAGTGGAGGATA
TTGCTATGCAGTATGAGTATATTTGTATTTCCATAATTAAAATATAGTGTATGTTCTTTT
TTTACACTAAAATATAGAGTACGTTCATCCGTAATATCAGTATATCCATTGAAAATGTGG
TATATTCATCCATGTAGTAGTATATACAGTAGTACTTGCAACCAAATAGTACAAATCTTT
CCTTTCAGGCTGATGGCCCAAGGCAGAAATATTAAATGGTGCATATATGTACTACCTTTT
GAGATTAGACTAGGAGTATATACTGCTTGCAAAACTAATTAACCACATTTACTTTTTTAT
TTCACTTATTTCTAGCTATATACTTCGTTTTGATAAGAGGTTACAAACTGCTCCTAGTAT
TTGTTTTGATGAGTATATACCATGTATTGTTTTATTTGCGGGTATATACCATTTACTGCT
TCTTTTGCAGGTATATACCATGTACTACTGAGGGTATATATTACTTTCCTATGAATGAGT
ATATGAAGTACATACCACGTCACGTGGGCGGACGTTTATACCTTTTTTTGTAGCACATAG
AGCATATACCTCAATTTTGCAAAAGGCACTCAGAAGTAAAAGTTGTATCTTCATTCAGAA
CGAGAGTATGCTCAACTGAGGAGTACATTCTATATATTGCTTGAACCATGTATAGTACTG
TAAAACAAACAGGCAAGTAGTATTCGATTGTCATCACACCTCTTTACAAACAAGCAAGGG
AATCTATACACGTTTTGATTTAATAAAATACAAATCCTTATACTTTTCCGTTACCCTGAT
TGCTTTCTACGGATAGCTTTCAATAAAATATATCGTGCGTGCAATTTTACTATCATTTTC
TTCTTGCAGGCGACAATGGAAAGAGTATATTGTGCAGAGGAAGATGATGAGAAGAAACTT
GTGGTTCTCATCCAATCTTTGTGGAACTCTCTTTATGTGCGATTGTGTACTTGTTGGGTC
CTTTTTCTGCGCACTTGCACTTGCAGAAGTATTCTGTTGTGCACATGTAAAATTATTTTG
ATTTGTCCTTGTTAGGCGTTGAACCTTAATGTGTAGAGTCG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_29834.1	1352	0.0	1 - 1352	100	1352 / 1352	None	ABC12127 ABC12128
MLOC_2874.2	1593	0.0	303 - 1593	92	1188 / 1294	CUST_2527_PI390587928	ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC16799 ABC19962 ABC30081 ABC33341 ABC34978 ABC38349 ABC44562 ABC44566 ABC49963
MLOC_1753.1	3578	3e-51	3338 - 3487	91	138 / 151	CUST_15698_PI390587928 CUST_8718_PI390587928 CUST_20789_PI390587928 CUST_18870_PI390587928	ABC05172 ABC12127 ABC12128 ABC30081 ABC34978 ABC34989 ABC44562 ABC46334 ABC49963
MLOC_81482.2	561	4e-169	184 - 561	95	361 / 379	None	ABC12127
MLOC_27395.1	766	2e-117	1 - 275	95	261 / 276	None	ABC05172 ABC12127 ABC12128 ABC30081 ABC49963
MLOC_60076.1	511	1e-89	32 - 262	93	214 / 231	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_28160.1	929	8e-87	424 - 658	91	215 / 235	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK371850	4112	2e-83	2430 - 2720	86	253 / 293	CUST_786_PI390587928	ABC12127 ABC47455
MLOC_31521.3	1575	2e-82	648 - 939	86	253 / 294	None	ABC12127 ABC47455
MLOC_31521.1	2211	2e-82	648 - 939	86	253 / 294	None	ABC12127 ABC47455
MLOC_31521.4	1473	2e-82	648 - 939	86	253 / 294	None	ABC12127
MLOC_31521.2	2328	2e-82	648 - 939	86	253 / 294	None	ABC12127 ABC47455
AK250595.1	856	1e-80	581 - 795	92	198 / 215	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK249247.1	750	1e-80	456 - 670	92	198 / 215	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK365264	1315	5e-79	1043 - 1254	92	195 / 212	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK362032	681	2e-78	411 - 615	93	190 / 205	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	2e-78	427 - 631	93	190 / 205	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK370037	1546	8e-77	1293 - 1485	94	181 / 193	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK374695	634	8e-77	359 - 573	91	196 / 215	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_81482.1	533	8e-77	350 - 533	95	176 / 185	None	ABC12127
AK250016.1	2853	4e-75	2558 - 2792	89	208 / 235	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
AK372031	1366	2e-73	1070 - 1277	91	189 / 208	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
AK359738	1264	6e-73	969 - 1193	89	200 / 225	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_61318.1	383	6e-73	186 - 383	92	182 / 198	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
MLOC_30440.1	361	2e-68	61 - 282	88	204 / 231	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK252392.1	1995	6e-68	1760 - 1972	89	189 / 213	None	ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC34978 ABC44948
MLOC_33574.1	258	6e-68	54 - 258	90	189 / 211	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_30852.1	368	3e-66	70 - 299	87	200 / 230	None	ABC01494 ABC05171 ABC05172 ABC05174 ABC12127 ABC17513 ABC21351 ABC21924 ABC24067 ABC30081 ABC44566 ABC44948
AK252837.1	2740	4e-65	2481 - 2669	90	179 / 198	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_81791.1	171	3e-61	7 - 169	93	152 / 163	CUST_30308_PI390587928	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
MLOC_78194.1	127	7e-53	2 - 127	97	122 / 126	None	ABC05171 ABC05174 ABC12127 ABC12128 ABC13836 ABC16799 ABC30081 ABC33341 ABC38349