barSeed - Barley Seed Development Database

Probe CUST_786_PI390587928

Source Contig U35_46844

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_786_PI390587928	Hv_44K_v2	GTGGGTTGATCGTGTTGTGATCAACATGTATTGCATGTTTCATTTGTAATCTAATGTTAC	52	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.274	1.187	1.347	0.944	0.358	0.332
Raw	141.937	200.815	209.370	228.013	29.669	30.905

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371850	4112	3e-21	3992 - 4051	97	58 / 60	plus	ABC12127 ABC47455
Harvest21	ABC47455	347	3e-25	53 - 112	100	60 / 60	minus	ABC47455
Harvest35	U35_46844	347	3e-25	53 - 112	100	60 / 60	minus

Contig Sequence (347 bp)

>U35_46844 347 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATTCACCTACAACCATAACATAACATTAGAACATGTAACATT
AGATTACAAATGAAACATGCAATACATGTTGATCACAACACGATCAACCCACCACATGTC
ACCTACCCCACGTACGAATTAGAATAACTTGATCCTAACGGAAATTTCATGCGCGAGCGG
CTTATGATTAACCTAGGACTTGTTGGGTTCTACACCAGGGCTTTTATCCCCAGAACGGCA
ACAAAAAAATATAAGTAATAACTAGCAGGTGGAAACACATATACTACCATTTGCCTTAAG
ATTGAACAACATACCATCAGGGGCTCCGTTTTAATACATAAAATAAA

Homology of Contig U35_46844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None