barSeed - Barley Seed Development Database

Probe ABC12989

Source Contig ABC12989

barSeed

Links

Affymetrix Source Sequence (1088 bp)

>ABC12989 1088
CTCCCCTCCCACCTCTCCCGTCGCCAGCCTTCCTTCCCCTCAGCAGACCCCCTGTGCTCC
CGTCCGCCGCGACAGACCCGTGCGCTCCCTTCTCCACCTCTCTCGTCAACCTGGATCTGT
CCTCCCATCGTCTCCACCAAAGCCAAGCAAAGCAGAGGAACAGGAATCCCGGTTGAAGGA
TGACACAGGCGGCGCGGCCGAGGGCGAGAACGAGCAGGGGGCACCCGCATCTTCGGGCCC
TCCGGGAAGTATTCCTCCCGTGACCTTGCCGCCCACACCTCCCTCAAGCCCAGGCACGAT
CCCCTGTGCCCCAAGGAGAACGGCGACAAGGTGGCGGCAGTAGTCACCATGGAAGAAGTC
GCAAGAAGATCTACCACCTCGTCTCCATTCCGGGATCTGTCGCCCGCGCCGCCGCCTCCC
TGCCCTCTTTGCCGTTGCCGTCGTCCATTGCCGCAGACGCCTCCTCCTCACTGGCGAGAT
GGTACGACCTCCCCTTACTCCTATCTATGACGGCTCTAATCCGTGCTCCTCCGGATGCCA
AGTTTCAGCTTTCGCCGCCTCCTGCCACTCATGGCGACCGCCGCGTCGCCCCCTCACCCA
CCACGCCCGGGACCCCATGGCGGCCCGTGTCCTGGTCCCCATGGCTATCGGCCTTTCCCC
CTCGCCCCCATGGCCGGCATCCCCATGGCGGCTGCTGTTGTGTTGAAAAGGGTGCTAAAG
TAGACCTTCCATTTTGGCTTGCGCATGGAATGTTGTCTCTGGAACAAGCGGTGTCAATAA
ATGTACCTCATTGCTTCACCCAGAAGCGACAATGGCAAGAGCATATTGTGAAGAGGAAGA
GGATGAGAAGAAACTTGTGGTTCTCATCCAATCTTTGTGGAACTCTCTTTATGTGTGATT
GTGCATTTGTTGGAACCTTTCTCTGTGCACTTGCAACAGTATTCTGTTGTGCACATGTAA
AATTATTTTGATGTGCCTTTGTTAGGCCTTGAACCTTAATGCGTGGAGTCGGTGGATGAT
GTATTGTATTTGATGTAATATGCTATTGAAATGAAATATATATTTTATTTGCAAAAAAAA
AAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_32055.2	486	0.0	1 - 486	96	466 / 486	None	ABC12988 ABC12989
MLOC_32055.1	592	0.0	43 - 456	96	397 / 414	None	ABC12988 ABC12989
MLOC_26626.1	495	3e-129	160 - 469	95	293 / 310	None	ABC03898 ABC12988 ABC12989
AK249247.1	750	9e-105	463 - 747	91	260 / 285	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK252837.1	2740	9e-105	2481 - 2740	93	245 / 263	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_30440.1	361	3e-104	94 - 355	93	246 / 265	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_35655.1	729	7e-101	54 - 262	99	206 / 209	None	ABC12988 ABC12989
MLOC_35655.2	299	9e-100	44 - 250	99	204 / 207	None	ABC12988 ABC12989
AK365264	1315	4e-98	1041 - 1313	91	248 / 273	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK374695	634	4e-98	361 - 634	91	249 / 274	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_64313.1	278	1e-97	1 - 257	92	242 / 264	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_28160.1	929	5e-92	451 - 721	90	243 / 271	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK359738	1264	2e-90	997 - 1264	90	240 / 268	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK250016.1	2853	9e-90	2581 - 2853	89	243 / 273	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
AK362032	681	1e-88	411 - 678	89	239 / 268	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	1e-87	427 - 692	89	237 / 266	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK370037	1546	3e-84	1293 - 1546	89	228 / 255	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_53920.2	753	3e-84	554 - 753	95	190 / 200	None	ABC12988 ABC12989 ABC25943
MLOC_76307.1	2422	1e-78	1991 - 2266	87	240 / 277	None	ABC08513 ABC12989 ABC13191
AK372031	1366	2e-76	1070 - 1312	89	216 / 244	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
MLOC_79169.2	2193	3e-70	1674 - 1866	92	178 / 194	None	ABC12989 ABC13191 ABC18776
MLOC_79169.1	1925	3e-70	1576 - 1768	92	178 / 194	None	ABC12989 ABC13191 ABC18776
MLOC_33574.1	258	1e-68	83 - 258	94	165 / 176	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
AK252392.1	1995	1e-63	1761 - 1977	88	190 / 217	None	ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC34978 ABC44948
MLOC_61318.1	383	9e-60	186 - 383	88	176 / 199	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
MLOC_7526.1	208	2e-57	9 - 208	88	175 / 200	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334
MLOC_76565.1	897	6e-57	231 - 397	91	152 / 167	None	ABC12989 ABC13191
AK250846.1	2265	6e-52	2124 - 2265	93	132 / 142	CUST_2110_PI390587928 CUST_8718_PI390587928 CUST_2499_PI390587928	ABC01497 ABC05171 ABC07805 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC50849