barSeed - Barley Seed Development Database

Probe ABC05172

Source Contig ABC05172

barSeed

Links

Affymetrix Source Sequence (1203 bp)

>ABC05172 1203
TTCGACAGATATTGTCCTAACTGACCACCAGTAATTTCTCTAATGTATCAGCATGGAATG
TCTCCTCCTGTTTTTCATGTTTACTATCCTTGTTAGTTTAGTACCATTTTCAAGATGGTA
AGTATATATTGAAAAACCGTTTAAAATTTCTGAAATAGTTGCTCTGCATGTTATGGAGAT
GATCTGCATATCATTTTGAAACTTATTATGTAATATATTTTCTAATTCTGCACTTACTTA
GTACAGTACTACCAAACATTTGGAAGCAGAGCTAAACATTGAAATATATGCTGTGCTAGT
TACTTGGAGCCACACAAAGATATAAAATCTCGGTTAACAAATGCTATCTGAAATTTAAGA
AACTGGAAGTAAATGGATGCTGTAGAAAAGTGAAATGCCCTCCATGTGTTTGTATTGTCC
CTTTGACCATGTATTCAGTAGTAATCATCTCCTTGTTGACATCAATGTGAATATCCCATG
CAAGTTGCGACTGTACCGTTTGCCCCACATGACAAGATATGAGCCTGACCCATAGTAATC
TTTTTCTTCTTCTTCAGAAACTAGTACAGTTATCTTGCAGAATAGGAATGGAGATGTGTA
TCGGTCCTAGTTTATTTCTCTCCTCTGTTGACTGCATGAATAACATTATGTGATTATTCT
GCAGACCACATTTTTACCTCATGTGTGTTTTTATTCGAATAACATGATGATGGTTGTAAC
CTGTAGTTAATTCCTTGGACAAAGACCAAATGTGTTAACAGACTACCTTGTATAATTTGT
CACACATATTAATTACAGTACTTATTTTATTTTATGGGTACATGAGGCCACGATTAATGT
TGGGTACTAGTTTACTAGTGGCGTAATTCTTATGTAGTGATGGCAGCAAGAATACTTATG
TTAACAAGTCTTCACCCTTTGTGATGAATAGTTTCCTTGTTCCGAAAGCCTTACCATCAT
TTTCTTCTAGAAGGTGGCAATGGCAAGAGCATATTGTGAAGAGGAAGAGGATGAGAAGAA
ACTTGTGGTTCTCATCCAATCTTTGTGGAACTCTCTTTATGTGCGATTGTGCATTTGTTG
GGTCCTTTTTCTATGCACTTGCACTTGCAGAAGTATCATGTTGTGTACATGTAAAATTAT
TTTGATGTGCCCTTGTTAGGCGTTGAACCTTAATGCGTGGAGTTGGTGATGATTGTATTG
TAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_1379.1	4383	0.0	3377 - 4383	99	1005 / 1007	CUST_2584_PI390587928 CUST_8720_PI390587928	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC_1379.4	2883	0.0	1880 - 2883	99	1002 / 1004	CUST_2584_PI390587928 CUST_8720_PI390587928	ABC05171 ABC05172 ABC30081 ABC30943
MLOC_1379.3	4109	0.0	3106 - 4109	99	1002 / 1004	CUST_2584_PI390587928 CUST_8720_PI390587928	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC_1379.2	4030	0.0	3027 - 4030	99	1002 / 1004	CUST_2584_PI390587928 CUST_8720_PI390587928	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC_1379.5	3198	0.0	2195 - 3198	99	1002 / 1004	CUST_8720_PI390587928	ABC05171 ABC05172 ABC05174 ABC16978 ABC30081 ABC30943
MLOC_1379.6	4187	0.0	3184 - 4187	99	1002 / 1004	CUST_2584_PI390587928 CUST_8720_PI390587928	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC_25777.1	1347	4e-74	708 - 880	96	167 / 174	None	ABC05172 ABC05174 ABC30081
MLOC_78516.10	2600	0.0	1821 - 2435	94	581 / 619	CUST_18503_PI390587928	ABC05171 ABC05172 ABC05174 ABC30943
MLOC_78516.1	2520	0.0	1989 - 2520	94	500 / 533	CUST_18503_PI390587928 CUST_26893_PI390587928	ABC05171 ABC05172 ABC05174 ABC30943
MLOC_78516.2	2407	0.0	1876 - 2407	94	500 / 533	CUST_18503_PI390587928	ABC05171 ABC05172 ABC05174 ABC30943
MLOC_78516.5	1091	0.0	568 - 1091	94	492 / 525	CUST_26893_PI390587928	ABC05171 ABC05172 ABC30943
MLOC_78517.1	679	0.0	1 - 469	94	446 / 472	None	ABC05172
MLOC_1379.7	3455	1e-177	3114 - 3455	99	341 / 342	CUST_2584_PI390587928 CUST_8720_PI390587928	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC_78516.8	721	2e-106	452 - 721	93	251 / 271	None	ABC05171 ABC05172 ABC30943
AK250595.1	856	6e-102	582 - 813	96	223 / 233	CUST_2493_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
MLOC_28160.1	929	3e-99	402 - 676	91	250 / 276	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_60076.1	511	2e-97	14 - 261	93	231 / 249	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK250016.1	2853	3e-94	2536 - 2810	89	247 / 276	None	ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC30943 ABC34978 ABC34989 ABC38349 ABC44562 ABC44948 ABC45569
AK359738	1264	2e-92	947 - 1221	89	246 / 276	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_3105_PI390587928	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK365264	1315	2e-91	1045 - 1272	93	215 / 230	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
AK374695	634	8e-91	358 - 591	93	218 / 235	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928 CUST_30308_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK249247.1	750	1e-89	461 - 688	93	213 / 229	None	ABC01494 ABC01497 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC11624 ABC11625 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC37734 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
AK362032	681	1e-83	411 - 633	92	206 / 224	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK366452	692	1e-83	427 - 649	92	206 / 224	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC_64313.1	278	5e-83	45 - 278	90	224 / 248	CUST_8718_PI390587928 CUST_2502_PI390587928 CUST_4954_PI390587928 CUST_8724_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC_78516.6	1345	6e-82	1174 - 1345	99	170 / 172	CUST_26893_PI390587928	ABC05171 ABC05172 ABC30081 ABC30943
MLOC_30440.1	361	2e-81	42 - 310	87	244 / 279	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
AK372031	1366	8e-81	1069 - 1295	91	207 / 228	CUST_8721_PI390587928 CUST_8722_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963
AK370037	1546	4e-79	1293 - 1504	92	196 / 213	CUST_6031_PI390587928	ABC01494 ABC05171 ABC05172 ABC05174 ABC05304 ABC06188 ABC09292 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC_33574.1	258	1e-78	32 - 258	90	209 / 232	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_78516.9	1222	5e-78	1058 - 1222	99	163 / 165	None	ABC05171 ABC05172 ABC30081 ABC30943
MLOC_78516.3	2753	2e-76	2592 - 2753	99	160 / 162	CUST_18503_PI390587928 CUST_26893_PI390587928	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
MLOC_78516.4	2640	2e-76	2479 - 2640	99	160 / 162	CUST_18503_PI390587928	ABC05171 ABC05172 ABC05174 ABC30081 ABC30943
AK252837.1	2740	8e-76	2478 - 2697	90	207 / 230	CUST_2110_PI390587928	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
AK252392.1	1995	3e-75	1763 - 1970	91	190 / 208	None	ABC05171 ABC05172 ABC05174 ABC05304 ABC12127 ABC12989 ABC13209 ABC13836 ABC19962 ABC21351 ABC30081 ABC34978 ABC44948
MLOC_61318.1	383	6e-72	185 - 383	91	182 / 199	None	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12989 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC44562 ABC46334 ABC49963
MLOC_30852.1	368	2e-67	61 - 323	85	224 / 264	None	ABC01494 ABC05171 ABC05172 ABC05174 ABC12127 ABC17513 ABC21351 ABC21924 ABC24067 ABC30081 ABC44566 ABC44948
AK371668	1529	1e-64	1269 - 1486	88	192 / 219	None	ABC05172 ABC06188 ABC13360 ABC17513 ABC21924 ABC24067 ABC34989 ABC46334
MLOC_2874.2	1593	1e-64	1411 - 1593	91	167 / 183	CUST_2527_PI390587928	ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC16799 ABC19962 ABC30081 ABC33341 ABC34978 ABC38349 ABC44562 ABC44566 ABC49963
MLOC_1753.1	3578	3e-60	3316 - 3487	91	158 / 173	CUST_15698_PI390587928 CUST_8718_PI390587928 CUST_20789_PI390587928 CUST_18870_PI390587928	ABC05172 ABC12127 ABC12128 ABC30081 ABC34978 ABC34989 ABC44562 ABC46334 ABC49963
MLOC_35304.3	1560	1e-59	1 - 177	90	160 / 177	None	ABC05172 ABC13209 ABC19962 ABC30081 ABC34978 ABC34989 ABC43152 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_35304.4	1555	1e-59	1 - 177	90	160 / 177	None	ABC05172 ABC13209 ABC19962 ABC30081 ABC34978 ABC34989 ABC43152 ABC44562 ABC44566 ABC46334 ABC49963
MLOC_24209.1	817	2e-56	151 - 309	92	146 / 159	None	ABC05172
MLOC_1624.1	232	1e-54	1 - 185	88	166 / 188	None	ABC01497 ABC05172 ABC06188 ABC12128 ABC13360 ABC16799 ABC17513 ABC21924 ABC24067 ABC33341 ABC38349 ABC46334
MLOC_27395.1	766	1e-53	607 - 766	91	145 / 160	None	ABC05172 ABC12127 ABC12128 ABC30081 ABC49963
MLOC_1047.1	146	5e-53	3 - 143	94	132 / 141	None	ABC05171 ABC05172 ABC05174 ABC13209 ABC30081 ABC44566
AK362540	2629	2e-52	2368 - 2554	87	163 / 187	CUST_2502_PI390587928	ABC05172
MLOC_2874.1	319	6e-52	184 - 319	94	128 / 136	None	ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC16799 ABC30081 ABC33341
MLOC_7526.1	208	8e-51	54 - 208	90	141 / 156	CUST_8721_PI390587928 CUST_2528_PI390587928	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334