barSeed - Barley Seed Development Database

Probe ABC16978

Source Contig ABC16978

barSeed

Links

Affymetrix Source Sequence (947 bp)

>ABC16978 947
GGCTACGTGGAGGAGGGCGGCGCGCCCTACGACTGGTACCAGCGCTACGCCGCGCTGCGC
CCCTTCGTCCGCCGCTTCGTGCCGCCGGCCTCCCGCCTCCTCATGATCGGCTGCGGCTCC
GCGCTTATGTCAGAGGATATGGCCGCTGATGGCTACATGGAGATAATAAACATTGACATT
TCTTCGGTTTTAATTGAGATGATGAGAAAGAAGTACTTCGATCTTCCACAGCTACAATAC
ATGCAAATGGATGTTAGAGATATGAGTAAATTTTCTGACGAATCATTTGATTGTGCCATC
GATAAAGGTACTTTGGACTCGTTGATGTGTGGTGTGGAGGCTCCTCTCAGCGCAGCTCAG
ATGGTCCTGGAAGTGGACAGGCTACTTAAACCAGGGGGAGTCTTTATGTTGATAACTTAT
GGTGACCCGTCAGCGCGAATTCCTCACTTGAACCAACCAGTATGCAGTTGGAATACTGTA
CTGTACATTCTGCCAAGACCTGGATTCAAGGGGAACACAACAAGGTCTTTCTTCGACCCT
GTTCCACTGACTAAGAGCGGTAGATTGCCTGAGGGCTTTGTTCTGGAGGACCCTGACTCT
CATTATATTTATGTCTGCAAAAAGGGCCAAGGACAGGGATAGATTCTCCAACCTTAAACC
ACTCGAAGTTGCAAGATTCCGGTTGAGCTGTAGGATAATTTATGTCACAACATTTGTGCA
TTGTTGTGATCCTTACAAGATCAGACAGCGTGATGCTGCCACCATAATGGCCATCCAAAA
ATAGAAAGTGTGTCTTTGCACGAGTATACATTTTTTTCAGTGATCTTGTAAGAATCATCA
AGTCATTATATTGTGTTACCACTGGTTGTAATGCGGTGCTGAGGATATGATTGTTTGGCA
CATTTAAGGAATATAATCTGTCCCAGTTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_75626.2	5586	0.0	4619 - 5425	99	805 / 807	CUST_25209_PI390587928	ABC04555 ABC16978
MLOC_75627.3	1523	0.0	1 - 719	99	718 / 719	None	ABC16978
MLOC_75627.2	1665	1e-102	638 - 840	100	203 / 203	None	ABC16978
MLOC_75627.4	1602	1e-102	596 - 798	100	203 / 203	None	ABC16978
MLOC_75627.1	1495	4e-53	1031 - 1144	100	114 / 114	None	ABC16978
MLOC_75626.1	5076	4e-53	4054 - 4167	100	114 / 114	CUST_25209_PI390587928	ABC04555 ABC16978
MLOC_1379.5	3198	8e-55	279 - 434	92	143 / 156	CUST_8720_PI390587928	ABC05171 ABC05172 ABC05174 ABC16978 ABC30081 ABC30943