- Probe CUST_4954_PI390587928
- Source Contig U35_19023
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4954_PI390587928 | Hv_44K_v2 | GAACTTTAATGCGTGGAGTCGGTGGATGATGTATTGTATTTGATGTGATATGCTACTGAA | 1192 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365264 | 1315 | 2e-24 | 1234 - 1293 | 100 | 60 / 60 | plus | ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963 |
| MLOC | AK374695 | 634 | 3e-21 | 553 - 612 | 97 | 58 / 60 | plus | ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 |
| MLOC | MLOC_64313.1 | 278 | 3e-21 | 24 - 83 | 97 | 58 / 60 | minus | ABC01497 ABC05171 ABC05172 ABC05173 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963 |
| JLOC1 | JLOC1_39299.6 | 881 | 4e-23 | 804 - 863 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_39299.5 | 2377 | 4e-23 | 2300 - 2359 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_39299.4 | 2863 | 4e-23 | 2786 - 2845 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_39299.3 | 891 | 4e-23 | 814 - 873 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_39299.2 | 1374 | 4e-23 | 1297 - 1356 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_39299.1 | 2358 | 4e-23 | 2281 - 2340 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_1797.1 | 227 | 2e-21 | 161 - 220 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC13209 | 1275 | 3e-25 | 1177 - 1236 | 100 | 60 / 60 | plus | ABC13209 |
| Harvest21 | ABC45569 | 645 | 1e-23 | 45 - 104 | 98 | 59 / 60 | minus | ABC45569 |
| Harvest21 | ABC38349 | 546 | 1e-23 | 48 - 107 | 98 | 59 / 60 | minus | ABC38349 |
| Harvest21 | ABC44803 | 528 | 6e-22 | 39 - 98 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC34989 | 481 | 6e-22 | 40 - 99 | 97 | 58 / 60 | minus | ABC34989 |
| Harvest21 | ABC12988 | 1043 | 6e-22 | 945 - 1004 | 97 | 58 / 60 | plus | ABC12988 |
| Harvest21 | ABC05170 | 561 | 6e-22 | 464 - 523 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC05168 | 824 | 6e-22 | 726 - 785 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01497 | 900 | 6e-22 | 823 - 882 | 97 | 58 / 60 | plus | ABC01497 |
| Harvest21 | ABC50354 | 547 | 8e-21 | 1 - 55 | 98 | 54 / 55 | minus | |
| Harvest35 | U35_19023 | 1291 | 3e-25 | 1193 - 1252 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46038 | 645 | 1e-23 | 45 - 104 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_42598 | 546 | 1e-23 | 48 - 107 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_38983 | 481 | 6e-22 | 40 - 99 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_14309 | 1300 | 6e-22 | 1203 - 1262 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14308 | 1269 | 6e-22 | 1167 - 1223 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_14300 | 1099 | 6e-22 | 1001 - 1060 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14291 | 821 | 6e-22 | 723 - 782 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_48516 | 547 | 8e-21 | 1 - 55 | 98 | 54 / 55 | minus |
Contig Sequence (1291 bp)
>U35_19023 1291 Hv_44K_v2 AGATCGCCGCCGCCACTTCCCTCCCCATCCCCTCCCCGCATCCGCTGCGGCTCCTGCCCT CCCCGCACCCTCCTCCGGGCCCTCCCGGCACGCGCCGTCGAGGGCTACGCGCTCTTCTTC GACGACCTCCTCTCGCGGTCCCATGCGTGGGACTGGTTCTCCGACGTGCTCCCCCGCCTC GTGCGCGTCCTCCTCCGCCTCCCCGCGCTGCTCGAGGACCACTACGCCGCCGCCCGGGCC GCGACCGGGCTCCGCCTCCTTGGGCCTCAGGACGCGGGCTTCGTGCTCCTAGGCCAGGAG CTCGTCGCTGCGTTGCTCGCCTGCGCGCTCTTCTACCTGTTCCCCACCGCCGGCCGCGGC GAGGCCCGACTCCCGGCCATCAATTTTGATGCCTTGTTCTCGGCACTGACTAACAATGCG AGGCAGAGCCAGTAGCACAAAGTGAGGTGCATTGCTCACTATTTCGAGAGGGTGACTGCC TCCATGCCTGCCGGTTTTGTGTCGTTTGAGTGCAAGGTTCTTCCTCGCGGCTCCCACTCG GGCGGAGTTACCTACCCTGACAGTGATGCCTGGATGAAATCTGGCGTGCCGCTCTGCCCA TTCTGGACAATGGGGAATTTCGCGTCCAGTGATGCTTCTTCTTCAGTCAAAGAGGCACAA AGGGCATCAGCAACCAGCTGCTCACTGCCGGATCTAATCTCCGCGCCACCGGTGAACTGC TACCAGGTGCCCAAGGGCTCAAGGAGGAAGCACTGGGACTCTGAGAGCATCCAGGATTGG TTGGAGACGGCGGAATTGGTCGGGCCACGGGTTTACAGCTGCAGCCATTGCCGGAACCAC GTCTGCCTCCACGACGATATCATCTTTGGTCGAGAAAAAAGAGACGGGAGGACTGGTTCC CTTAACTCGCTGGGGGTAGCTCGCCGCCTGGTAGCACACGCCCCTTCACATCTGTTTTTC TCAGGAATCGACCCTTCACATATGACAGCAGCAACACAAAAGCGGCAATGGCAAGAGCAT ATTGTGCAGAGGAAGAGGATGTGAAGAAACTTGTGGTTCTCATCCAATCTTTGTGAAACT CTCTTTATATGCGATTGTGCACTTGTTGGGTCATTTTTCTGTGCACTTGCACTTGCACAA GTATTCAGTTGTGCACATGTAAAATTATTTTGATGTGCCCTTGTTAGGCGTTGAACTTTA ATGCGTGGAGTCGGTGGATGATGTATTGTATTTGATGTGATATGCTACTGAAATGAAATA TTCATTTTATTTACAAAAAAAAAAAAAAAAA
Homology of Contig U35_19023 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g01980.1 | 516 | 5e-57 | |
| Arabidopsis v10 | None |