barSeed - Barley Seed Development Database

Probe CUST_30308_PI390587928

Source Contig U35_38983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30308_PI390587928	Hv_44K_v2	TATTGTGCAGAGGAAGAGGATGAGAAGAAACTTTGTGGTTCTCATCCAATCTTCGTGCAA	213	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374695	634	2e-24	379 - 438	100	60 / 60	plus	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC07851 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC17513 ABC19962 ABC21351 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334
MLOC	MLOC_81791.1	171	2e-24	14 - 73	100	60 / 60	plus	ABC01497 ABC05171 ABC05174 ABC05304 ABC06188 ABC12127 ABC12988 ABC13209 ABC13836 ABC19962 ABC21351 ABC24067 ABC30081 ABC34978 ABC34989 ABC38349 ABC44562 ABC44566 ABC44948 ABC45569
JLOC1	JLOC1_54402.1	171	8e-25	14 - 73	100	60 / 60	plus
Harvest21	ABC34989	481	3e-25	214 - 273	100	60 / 60	minus	ABC34989
Harvest35	U35_38983	481	3e-25	214 - 273	100	60 / 60	minus

Contig Sequence (481 bp)

>U35_38983 481 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAAATAAAATGTATATTTCATTTCAGTAGCATATCACATCAA
ATACAATACATCATCCACCGACTCCATGCATTAAGGTTCAACGCCTAACAAGGGCACATC
AAAATAATTTTACATGTGCACAACATAATACTTCTGCAAGTGCAAGCCCACAGAAAAAGG
ATCCAAAAAGTGCACAATCGCACATAAAGAGAGTTGCACGAAGATTGGATGAGAACCACA
AAGTTTCTTCTCATCCTCTTCCTCTGCACAATATGCTCTTGCCATTGCCGCCTGCAAGAA
GAAAATGATGATAAGGCTTTCAGACCAAGGAAACTAGTAAAATTGCACGAACGATAACCA
ATGATAAAACAGTAGAAAATTGTTTTCTCATTCATCTAGTTATGACTTACGAAGTGGAGT
GGAAAACTACTCACAGACCAGAACCACCGTGCACTTTTTTCAAGGGAAACACACCATAAA
C

Homology of Contig U35_38983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None