barSeed - Barley Seed Development Database

Probe ABC01117

Source Contig ABC01117

barSeed

Links

Affymetrix Source Sequence (676 bp)

>ABC01117 676
CGCACCCTGGCCGACTATAACATCCAGAAGGAGTCCACACTCCACCTGGTGCTCAGGCTC
CGTGGTGGCATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTT
GAGTCCTCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCC
CCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCT
GACTATAACATCCAGAAGGAGTCCACACTCCACCTGGTGCTCAGGCTCCGTGGTGGCATG
CAAATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGAC
ACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG
CGTCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAACATC
CAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGCCACTAAGCTCCTGGT
GATGGAGCTGCTCCTGTCTCTAGGTTCACAAGGCTCGGTGTCTCTGGTGTTCTAATGGAG
TCTCGTCTGTGTCTTTGTTTCTGTACCGTACTGTGATGCAGTTTTATCGTTTGTATCTTT
AACTATAATAAGTGAG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360704	1727	3e-78	84 - 311	90	205 / 228	CUST_34666_PI390587928 CUST_14502_PI390587928 CUST_15758_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360597	1495	2e-113	914 - 1210	92	272 / 297	CUST_14537_PI390587928 CUST_34710_PI390587928 CUST_11183_PI390587928 CUST_34621_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK375488	1613	4e-81	102 - 328	91	206 / 227	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK248213.1	1169	2e-103	670 - 966	90	266 / 297	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK248348.1	1407	2e-74	258 - 472	90	194 / 215	CUST_5215_PI390587928 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK372915	1481	4e-91	937 - 1232	87	258 / 296	CUST_34700_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK371303	1634	9e-93	1164 - 1459	88	259 / 296	CUST_18646_PI390587928 CUST_23509_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	9e-93	433 - 728	88	259 / 296	CUST_14531_PI390587928 CUST_23509_PI390587928 CUST_18646_PI390587928 CUST_34489_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK354759	1306	5e-155	105 - 560	88	403 / 456	CUST_5216_PI390587928 CUST_5233_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK252178.1	1017	2e-94	526 - 821	88	260 / 296	CUST_5216_PI390587928 CUST_14536_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK372493	1722	4e-86	1201 - 1478	87	243 / 278	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK249379.1	803	1e-66	138 - 365	87	198 / 228	CUST_4457_PI390587928 CUST_14536_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
MLOC_17076.1	689	4e-86	1 - 180	99	178 / 180	CUST_15758_PI390587928 CUST_34666_PI390587928 CUST_14502_PI390587928	ABC01058 ABC01110 ABC01117 ABC39599 ABC40971
AK357664	735	3e-78	102 - 329	90	205 / 228	CUST_24042_PI390587928 CUST_40121_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK252410.1	727	1e-76	92 - 319	89	204 / 228	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK360864	759	2e-74	104 - 330	89	202 / 227	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770