barSeed - Barley Seed Development Database

Probe ABC01058

Source Contig ABC01058

barSeed

Links

Affymetrix Source Sequence (534 bp)

>ABC01058 534
GGAGGGCATCCCTCCGGACCAGCAGCGTTTCATCTTTGCTGGCAAACAGCTCGAGGATGG
CCGCACGCTTTCTGACTACAACATCCAAAAGGAGTCCCCTCTCCATCTGGTGCTCAGGCT
CCGTGGTGGTATGCAGATTTTCGTCAAGACCCTCCCCGGCAAGACCATCCCCCTGGAGGT
TTAGTCCTCGGACCCCCTTGACAATGTTAAGGCGAAGATCCAGGACAAGGAGGGCATTCC
CCCGGACCAACAGCGTTTCATTTTTTCTGGTAAACAGCTTTAGGATGGCCGCCCCTTGGC
GGACTACAACATCCAAAAGGAGTCGACCCTTCCCTTGGTGCTCCGTCTGCGTGGTGGCCC
CTAAGCTCCTGGTGATGGAACTGCTCCTGTCTCTAGGTTCCCAAGGCTCGGTGTCTCTGG
TGTTTTAATGGAGTCTCGTCTGTGTCTTTGTTTCTGTACCGTACTGTGAAGCAGTTTTAT
CGTTTGTATCTTTTAACTATGAATAAGTGAGCCCCGAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360704	1727	5e-104	410 - 767	86	308 / 359	CUST_15758_PI390587928 CUST_14502_PI390587928 CUST_34666_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360597	1495	5e-99	397 - 754	85	304 / 358	CUST_11183_PI390587928 CUST_14537_PI390587928 CUST_34710_PI390587928 CUST_34621_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK248213.1	1169	2e-108	609 - 1006	85	338 / 400	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK248348.1	1407	7e-53	258 - 472	84	181 / 215	CUST_5215_PI390587928 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK354759	1306	2e-83	431 - 787	82	296 / 359	CUST_5216_PI390587928 CUST_5233_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK372493	1722	3e-87	438 - 795	83	299 / 360	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
MLOC_17076.1	689	3e-81	3 - 187	96	178 / 185	CUST_15758_PI390587928 CUST_34666_PI390587928 CUST_14502_PI390587928	ABC01058 ABC01110 ABC01117 ABC39599 ABC40971
AK374035	627	3e-56	24 - 250	84	192 / 228	None	ABC01042 ABC01050 ABC01051 ABC01058 ABC01078 ABC01106 ABC24558