barSeed - Barley Seed Development Database

Probe ABC01056

Source Contig ABC01056

barSeed

Links

Affymetrix Source Sequence (1056 bp)

>ABC01056 1056
GCCGCACCCTGGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGGC
TCCGTGGTGGCATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACTATCACCTTGGAGG
TTGAGTCCTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCC
CTCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGG
CTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTCCGTGGTGGCA
TGCAGATTTTCGTTAAGACTCTCACCGGCAAGACCATCACACTGGAGGTTGAGTCCTCGG
ACACCATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGC
AGCGCCTAATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAACA
TCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTCCGTGGTGGCATGCAGATCTTTG
TCAAGACCCTCACCGGCAAGACCATCACACTGGAGGTTGAGTCCTCGGACACCATTGACA
ACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCT
TTGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTGGCGGACTACAACATCCAGAAGGAGT
CCACCCTTCACTTGGTGCTCCGGCTCCGTGGTGGCCAGTAAGCTCCTGTACATGGTGCTT
CTGTTTCTGTGTTCACAAGTCTTCGTGCCTTAGTTGGAGTTGTCGTCCGTGTCTTTTCTA
GTGTGTCGTCTGGGTCTGTCGTTGGTGTCTTCGTTTCTACAGTACTGTGGTGCAGTGTTA
CTGGTTGGGTCTGAAACTTCTGCTGTCGTGCAGCATGTTCGATGAGCTATGAGTAAGTGA
GCCCTGAATCAAGTGAGCCCTGTTTACGGTCTATAATTGTGTTGGTTCTGAATTTGATAT
ATAATTCTGTTATTTTTCAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360597	1495	9e-75	71 - 298	89	203 / 228	CUST_34710_PI390587928 CUST_11183_PI390587928 CUST_14537_PI390587928 CUST_34621_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK375488	1613	1e-77	102 - 328	90	204 / 227	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK360704	1727	6e-106	1153 - 1451	90	269 / 299	CUST_34666_PI390587928 CUST_15758_PI390587928 CUST_14502_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK248213.1	1169	3e-114	668 - 966	92	274 / 299	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK248348.1	1407	1e-82	258 - 484	91	207 / 227	CUST_5200_PI390587928 CUST_5215_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK371303	1634	7e-76	93 - 319	89	203 / 227	CUST_23509_PI390587928 CUST_14531_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	1e-93	2 - 272	90	243 / 271	CUST_14531_PI390587928 CUST_18646_PI390587928 CUST_23509_PI390587928 CUST_34489_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK372915	1481	7e-81	94 - 320	91	206 / 227	CUST_34700_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK372493	1722	9e-65	112 - 339	86	197 / 228	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK354759	1306	4e-63	105 - 332	86	196 / 228	CUST_5216_PI390587928 CUST_5233_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK252178.1	1017	2e-66	139 - 366	87	198 / 228	CUST_4457_PI390587928 CUST_5216_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	4e-68	138 - 365	87	199 / 228	CUST_14536_PI390587928 CUST_5216_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
MLOC_12310.1	475	2e-130	223 - 475	100	253 / 253	CUST_28531_PI390587928 CUST_34621_PI390587928 CUST_11183_PI390587928 CUST_14537_PI390587928 CUST_34710_PI390587928	ABC01056 ABC49693
AK357664	735	4e-78	102 - 329	90	205 / 228	CUST_40121_PI390587928 CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK252410.1	727	9e-80	92 - 319	90	206 / 228	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK360864	759	3e-74	104 - 330	89	202 / 227	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK251133.1	706	7e-66	21 - 250	87	199 / 230	CUST_25229_PI390587928 CUST_14543_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK373540	720	4e-58	108 - 335	85	195 / 230	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_61131.1	767	3e-54	462 - 673	85	180 / 212	None	ABC01036 ABC01038 ABC01041 ABC01044 ABC01050 ABC01051 ABC01056 ABC01079 ABC01087 ABC22044 ABC47497
MLOC_20236.1	209	7e-51	1 - 209	84	176 / 209	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770