barSeed - Barley Seed Development Database

Probe ABC01072

Source Contig ABC01072

barSeed

Links

Affymetrix Source Sequence (1035 bp)

>ABC01072 1035
CCAAGAAATCCCCACCCAATCTCGTCTCCGATTGACTCGAGAGCTCGTCAAATCCTCCTC
CCCGCGGCCTCAAGATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTG
AGGTTGAGAGCTCTGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCA
TCCCCCCGGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCC
TCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTTCGTGGTG
GTATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGAGCT
CTGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC
AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCTGACTACA
ACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGCCTTCGGGGAGGGATGCAGATCT
TCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAGGTGGAGTCGTCCGACACCATTG
ACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGA
TCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTACAACATTCAGAAGG
AGTCCACCCTTCACCTGGTGCTCCGCCTCCGTGGTGGTCAGTAATTGCCCTGGCGTTGGA
CATCCTGGTGGTGGTCAGTAATTGCCCTGGCGTTGGACATCCTGGTGGTCGTTCGTCCGG
CGGATCATTGAACTGTTATCTCGTTCGTGTCAGTCCTATTGTGTTTGTTTGATGAACTAT
CGAGTCATGTGTTGGTTTAAACAGTTGCTGGTATAGCAGTATTATTTAGTAATGAATAAG
CGAACATCCGGTAAAAAAAAAAAAAAAAATTTACTGTTGATTTTTCTAACTTGCGCTTAA
AAAAGAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK372915	1481	5e-87	1005 - 1233	92	213 / 231	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK371303	1634	5e-87	92 - 320	92	213 / 231	CUST_18646_PI390587928 CUST_23509_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	4e-88	502 - 729	93	211 / 228	CUST_18646_PI390587928 CUST_34489_PI390587928 CUST_23509_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK252178.1	1017	2e-66	138 - 353	88	190 / 216	CUST_4457_PI390587928 CUST_14536_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK354759	1306	2e-71	104 - 328	88	199 / 225	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK372493	1722	9e-75	111 - 335	89	201 / 225	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK248348.1	1407	5e-77	257 - 485	90	205 / 229	CUST_5200_PI390587928 CUST_5215_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK375488	1613	1e-83	101 - 329	91	209 / 229	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK248213.1	1169	3e-79	739 - 965	90	207 / 229	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360597	1495	4e-73	70 - 297	89	202 / 228	CUST_14537_PI390587928 CUST_34621_PI390587928 CUST_11183_PI390587928 CUST_34710_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK360704	1727	1e-157	84 - 538	89	404 / 455	CUST_14502_PI390587928 CUST_34666_PI390587928 CUST_15758_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK249379.1	803	9e-75	137 - 355	90	197 / 219	CUST_5216_PI390587928 CUST_4457_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
MLOC_21796.1	415	1e-147	1 - 323	96	311 / 324	CUST_34700_PI390587928 CUST_23991_PI390587928	ABC01072
AK357664	735	3e-74	102 - 319	90	196 / 218	CUST_40121_PI390587928 CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK252410.1	727	7e-76	92 - 318	89	203 / 227	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK360864	759	3e-74	104 - 321	90	196 / 218	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK251133.1	706	7e-66	21 - 238	88	191 / 218	CUST_25229_PI390587928 CUST_14543_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK373540	720	1e-62	108 - 332	86	194 / 225	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_20236.1	209	7e-51	4 - 206	85	172 / 203	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770