barSeed - Barley Seed Development Database

Probe ABC01041

Source Contig ABC01041

barSeed

Links

Affymetrix Source Sequence (718 bp)

>ABC01041 718
GCAAACCGCCGCCCCCGCCGCCTCCACTGCCGTCGCCGCCACAGCGCGCGGAGGCGACCG
CCCCACCGCCGCCAAGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCT
GGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG
CATCCCGCCGGACCAGCAACGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTAC
TCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTCGTGG
TGGTGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGCAAAAGCACAAGCA
CAAGAAGGTGAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGACGATTCCACCGGCAAGGT
AACCCGGCTCAGGAAGGAGTGCCCCAACGCCGACTGCGGTGCCGGGACCTTCATGGCCAA
CCACTTCGACCGTCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGGC
CTAGAGGTGGCTTGCGTTTGCTCTGCTCTTTTACCCTGTCGTTTGTCATTGAAAACTGAA
ACCTTGGAGTAATATGTTTTCTGGATACTTGATCGACTATTGCTGAGATGCTATGCGAGC
TAAAAAAAAAAAAAAAATGAATGATATTCTTTTTCATGGTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360864	759	0.0	33 - 692	98	646 / 661	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK252410.1	727	0.0	46 - 590	96	523 / 546	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK357664	735	0.0	44 - 600	95	532 / 560	CUST_24042_PI390587928 CUST_40121_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
MLOC_44900.1	677	5e-135	393 - 677	97	277 / 285	None	ABC01036 ABC01038 ABC01041 ABC01079 ABC01087
AK372915	1481	2e-74	778 - 998	90	198 / 221	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK371303	1634	5e-76	1005 - 1231	89	203 / 227	CUST_23509_PI390587928 CUST_18646_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK248348.1	1407	5e-81	256 - 485	90	208 / 230	CUST_5215_PI390587928 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK375488	1613	1e-82	1014 - 1240	91	207 / 227	CUST_329_PI415269222 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK360704	1727	1e-77	540 - 766	90	204 / 227	CUST_14502_PI390587928 CUST_34666_PI390587928 CUST_15758_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK357004	1103	5e-76	274 - 500	89	203 / 227	CUST_14531_PI390587928 CUST_34489_PI390587928 CUST_23509_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK252178.1	1017	5e-71	367 - 587	89	196 / 221	CUST_5216_PI390587928 CUST_4457_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	5e-76	122 - 358	89	211 / 238	CUST_4457_PI390587928 CUST_14536_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK371553	732	5e-81	56 - 378	84	270 / 323	None	ABC01036 ABC01038 ABC01041 ABC01051 ABC01078 ABC01079
AK360597	1495	6e-75	67 - 297	89	205 / 231	CUST_14537_PI390587928 CUST_34710_PI390587928 CUST_34621_PI390587928 CUST_11183_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK248213.1	1169	2e-69	739 - 965	88	199 / 227	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK372493	1722	1e-71	1252 - 1479	88	201 / 228	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK354759	1306	1e-71	789 - 1016	88	203 / 230	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK373540	720	1e-72	106 - 338	88	207 / 235	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK251133.1	706	4e-72	16 - 238	89	198 / 223	CUST_14543_PI390587928 CUST_25229_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_61131.1	767	6e-70	462 - 703	87	210 / 242	None	ABC01036 ABC01038 ABC01041 ABC01044 ABC01050 ABC01051 ABC01056 ABC01079 ABC01087 ABC22044 ABC47497
MLOC_20236.1	209	1e-57	4 - 206	87	176 / 203	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770