barSeed - Barley Seed Development Database

Probe ABC01044

Source Contig ABC01044

barSeed

Links

Affymetrix Source Sequence (810 bp)

>ABC01044 810
GAACGGAACCAACCAACAAATCCCCAAGCCAATCTCGTCTCCGATCGGCTCCGGCTCCAG
CTCTCCTCCTCTGTTCCTCCCCCGCCGCCCCAAGATGCAGATCTTTGTGAAGACGTTGAC
AGGCAAGACCATCACCCTTGAGGTCGAGTCGTCTGACACCATCGACAACGTCAAGGCCAA
GATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTCATCTTCGCTGGCAAGCA
GCTTGAGGACGGCAGGACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCT
TGTCCTGCGCCTCCGTGGAGGCATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCAT
CACTCTGGAGGTTGAGAGCTCAGACACTATTGACAACGTCAAGGCCAAGATCCAGGACAA
GGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGCAAGCAGCTGGAGGATGG
GCGCACCCTTGCCGACTACAACATCCAGAAGGAATCCACTCTTCACCTGGTGCTCCGCCT
CCGAGGTGGTCAGTGATTGCCCTGGGTACTCTGGTGGGTGGCCCCTGTTGCTCATGTGAA
GTGTCAGTCTCGTTTGTGTCAAGTTCTACAGTGTCTGGTTTCATGTTTCATGGATCATCG
AGTCCCAGTGAGATGTGTTGGTTTCGTTTAAACAGTCATGGATCATCGAGTCCCAGTGCG
ATGTGTGTTGGTTTCGTTTAAACAGTTGCTGGTATAGCAGTACGGTCAAGTATGAATAAG
TGAACTTTGAACTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK372493	1722	1e-177	340 - 788	92	412 / 449	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK249379.1	803	1e-67	366 - 589	88	196 / 224	CUST_14536_PI390587928 CUST_4457_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK252178.1	1017	1e-67	595 - 818	88	196 / 224	CUST_14536_PI390587928 CUST_5216_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK372915	1481	7e-75	1005 - 1229	89	201 / 225	CUST_34700_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK354759	1306	5e-66	789 - 1012	87	195 / 224	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK371303	1634	2e-74	1233 - 1456	89	200 / 224	CUST_14531_PI390587928 CUST_23509_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK248348.1	1407	2e-154	714 - 1168	88	402 / 455	CUST_5215_PI390587928 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK357004	1103	2e-74	502 - 725	89	200 / 224	CUST_14531_PI390587928 CUST_23509_PI390587928 CUST_34489_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK360704	1727	3e-143	540 - 995	87	398 / 458	CUST_15758_PI390587928 CUST_14502_PI390587928 CUST_34666_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK248213.1	1169	1e-66	739 - 966	87	198 / 228	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360597	1495	7e-65	983 - 1210	86	197 / 228	CUST_34710_PI390587928 CUST_34621_PI390587928 CUST_14537_PI390587928 CUST_11183_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK375488	1613	4e-152	1014 - 1473	88	404 / 460	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK357664	735	2e-74	102 - 328	89	204 / 229	CUST_40121_PI390587928 CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK252410.1	727	1e-72	92 - 312	89	197 / 221	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK360864	759	1e-71	104 - 331	88	201 / 228	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK373540	720	2e-59	108 - 328	86	189 / 221	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK251133.1	706	2e-64	21 - 241	87	192 / 221	CUST_25229_PI390587928 CUST_14543_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_61131.1	767	2e-55	455 - 678	84	189 / 224	None	ABC01036 ABC01038 ABC01041 ABC01044 ABC01050 ABC01051 ABC01056 ABC01079 ABC01087 ABC22044 ABC47497
MLOC_20236.1	209	5e-51	1 - 206	84	174 / 206	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770