barSeed - Barley Seed Development Database

Probe ABC24558

Source Contig ABC24558

barSeed

Links

Affymetrix Source Sequence (481 bp)

>ABC24558 481
GCACGAGGCACTCCTGCAGCCCACTCATAAGCTGTTCTACCCAACCAACACCACATCTAC
ACCGAGACACAGCACACCGCAAACATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACC
ATCACGCTCGAAGTCGAGAGCTCCGACACCATCGACAATGTCAAGAGCAAGATCCAGGAC
AAGGAGGGCATTCCCCCGGACCAACAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAT
GGTCGCACCTTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGT
CTGCGTGGCGGACAGTAGGTGGTTGATGATTGACGGTTCACGATGATATCTGGGACAGGG
CGTTCATGGGATGATCTGCCTGCGGGAGATCTGGTCTTATTCATAGTTTACACGACGGCT
GTTAAAGCCTGAACAATGCATTAAGCATGCCTACGGGCGCTGAGAAAAAAAAAAAAAAAA
A

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360704	1727	1e-60	539 - 752	87	186 / 215	CUST_15758_PI390587928 CUST_14502_PI390587928 CUST_34666_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK374035	627	6e-73	24 - 247	89	199 / 224	None	ABC01042 ABC01050 ABC01051 ABC01058 ABC01078 ABC01106 ABC24558
AK248213.1	1169	5e-69	738 - 975	87	207 / 239	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK354759	1306	2e-68	560 - 784	88	199 / 227	CUST_5216_PI390587928 CUST_5233_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK360597	1495	2e-68	982 - 1215	87	204 / 235	CUST_11183_PI390587928 CUST_14537_PI390587928 CUST_34710_PI390587928 CUST_34621_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK372493	1722	1e-65	1252 - 1483	86	202 / 234	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK375488	1613	7e-63	1014 - 1237	86	194 / 225	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770