barSeed - Barley Seed Development Database

Probe ABC01108

Source Contig ABC01108

barSeed

Links

Affymetrix Source Sequence (652 bp)

>ABC01108 652
GCACGAGGGCCAAAATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTCG
AGGTTGAGAGCAGCGATACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGGA
TCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCC
TTGCCGACTACAACATCCAGAAGGAGTCGACACTCCATCTCGTCCTCAGGCTCCGCGGAG
GCATCATCGAGCCGTCCCTGCAGGCGCTTGCCCGCAAGTACAACCAGGAGAAGATGATCT
GCCGCAAATGCTATGCGCGCCTGCACCCAAGGGCTGTCAACTGCCGCAAGAAGAAGTGTG
GCCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAGAGTGCTACTACTAGTC
AGTTTCATGGACCGGTTAAATCCATCGCCGTGTCAGAGTTTATTCTGTTATCGTCTCGTT
GTCGTTGAACCTTATTTTACTTTTGCTTTCAGCCTCCTATCGTTGTGGTGATGATTGACA
GTATTCGTATATGGTAGCAAACTACTATAATTTTGCCGTAAAAAAAAAAAAAAAAAATTA
TCTCCTCTGTTTGATCTGCTTTTTGGTTAATTCTTGAAGTAATCTCTCCCCG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251133.1	706	2e-159	16 - 410	92	365 / 395	CUST_25229_PI390587928 CUST_14543_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_75382.1	302	8e-158	1 - 302	100	302 / 302	None	ABC01040 ABC01108
AK373540	720	2e-98	108 - 491	84	322 / 384	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK372915	1481	9e-63	1006 - 1226	87	193 / 223	CUST_34700_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK360704	1727	9e-68	996 - 1216	88	194 / 221	CUST_34666_PI390587928 CUST_14502_PI390587928 CUST_15758_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK356610	874	2e-69	127 - 357	87	202 / 231	CUST_34712_PI390587928 CUST_15522_PI390587928	ABC01030 ABC01040 ABC01063 ABC01108 ABC22044 ABC49720
AK354759	1306	2e-69	789 - 1009	88	195 / 221	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK248213.1	1169	9e-63	283 - 512	86	198 / 231	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK371303	1634	9e-63	1233 - 1453	87	193 / 223	CUST_23509_PI390587928 CUST_14531_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	9e-63	502 - 722	87	193 / 223	CUST_23509_PI390587928 CUST_14531_PI390587928 CUST_34489_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
MLOC_20236.1	209	9e-63	1 - 206	88	181 / 206	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770
AK372493	1722	2e-59	1252 - 1472	86	189 / 221	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770