barSeed - Barley Seed Development Database

Probe ABC01086

Source Contig ABC01086

barSeed

Links

Affymetrix Source Sequence (757 bp)

>ABC01086 757
CCGCCGCGAGGGAGAGGAGGCGAAAAACCTCGGAGGCGGAGGGAGAGGGGACTAGGAGGA
GATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACGCTCGAGGTGGAGAGCAG
CGACACCGTCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCAGACCA
GCAAAGGCTAATTTTTGCTGGAAAGCAGCTGGACGATGGACGGACATTAGCCGACTACAA
CATTCAGAAAGAGTCGACACTTCATTTGGTCCTGAGGCTCAGGGGTGGGACTATGATCAA
GGTGAAGACACTCACGGGTAAGGAAATCGAGATTGACATCGAGCCTACCGACACAATTGA
TAGGATCAAGGAGCGTGTCGAGGAAAAAGAGGGCATTCCCCCTGTTCAGCAGAGGCTCAT
TTATGCTGGGAAGCAACTTGCTGACGATAAAACTGCTAAAGATTACAACATTGAAGGTGG
TTCAGTGCTCCATCTTGTGCTTGCTCTGAGAGGTGGTCACTAGATACAGTTTCATTTCAA
CTAGGAATATATTCACAAGGAGAGCAGCTTTGTTTATGCTATTTTCGTCCTACCATTGTA
CTTGGCTTAAAATCATGCACTTGACATGATTGGAGTGGCAAGTTATCAGTATATAGGTAA
CTAAGGAAGCTATTTGTCTACAGTGGATGAGAAATACTTGAACTGATAAGTTTATGAGCT
CTGTCAACTAATTATTTGTCGCTAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK375520	755	0.0	11 - 755	99	743 / 745	CUST_15731_PI390587928	ABC01030 ABC01040 ABC01042 ABC01048 ABC01086 ABC22044
MLOC_51270.2	677	0.0	1 - 509	100	509 / 509	None	ABC01030 ABC01086
AK249354.1	1018	5e-175	137 - 604	90	423 / 468	CUST_5240_PI390587928	ABC01030 ABC01040 ABC01048 ABC01051 ABC01063 ABC01086 ABC01106 ABC22044 ABC51028
MLOC_51270.1	373	2e-170	45 - 369	100	325 / 325	None	ABC01030 ABC01086
MLOC_50567.1	1242	2e-134	777 - 1150	90	336 / 374	None	ABC01030 ABC01086 ABC51028
AK373540	720	3e-58	83 - 301	86	189 / 221	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK251133.1	706	2e-55	19 - 217	86	172 / 199	CUST_14543_PI390587928 CUST_25229_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK252178.1	1017	2e-54	589 - 797	85	179 / 210	CUST_5216_PI390587928 CUST_14536_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	2e-54	360 - 568	85	179 / 210	CUST_5216_PI390587928 CUST_14536_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770