barSeed - Barley Seed Development Database

Probe ABC01042

Source Contig ABC01042

barSeed

Links

Affymetrix Source Sequence (1006 bp)

>ABC01042 1006
CCAGCTTCCATCCTACCACCGCTGGCCGCAACGGAACCAACAAATCCCCAACCAATCTCG
TCTCCAATCGACCCGAGGCTCGTCGAATCCTCCTCCCCCGCCGCTTCAAGATGCAGATCT
TTGTGAAGACATTGACGGGCAAGACCATCACCCTTGAGGTGGAATCCTCTGACACAATCG
ACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCA
TCTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACCCTCGCTGACTACAACATCCAGAAGG
AGTCCACCCTTCACCTTGTCCTCCGTCTTAGGGGTGGCATGCAGATCTTCGTGAAGACCC
TCACCGGCAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACTATCGACAACGTCAAGG
CCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCTGGCA
AGCAGCTGGAGGATGGTCGCACCCTTGCTGACTACAATATCCAGAAGGAGTCCACCCTTC
ACCTTGTCCTCCGCCTTCGGGGAGGCATGCAGATCTTCGTGAAGACCCTGACTGGGAAGA
CCATCACTCTGGAGGTGGAGAGCTCAGACACCATCGACAATGTCAAGGCCAAGATCCAGG
ACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGG
ATGGTCGGACCCTTGCGGACTACAACATCCAGAAGGAGTCTACCCTTCACCTGGTGCTCC
GCCTCCGTGGTGGTCAGTAATTGCCCTAGCGTTGGAAGTCCTGGGTCGTCCGGTGGGCGG
TGCCCTGTCTGTTCAATTGAACTGTTTTCTCGTTTGCGTCTGTCCTACTGTGGTTGGTTT
AATGAACTATAGAGTCACCGTGTTATGTGTGGTTTAAACTGTTGCTGGTACAGCAGTATC
ATCAACTAATGAATAAGTGAACTTCATATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK252178.1	1017	1e-67	595 - 809	88	190 / 215	CUST_14536_PI390587928 CUST_4457_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	1e-67	366 - 580	88	190 / 215	CUST_14536_PI390587928 CUST_5216_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK372915	1481	2e-66	1005 - 1220	88	190 / 216	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK371303	1634	3e-69	1233 - 1447	89	191 / 215	CUST_14531_PI390587928 CUST_18646_PI390587928 CUST_23509_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	3e-69	502 - 716	89	191 / 215	CUST_14531_PI390587928 CUST_34489_PI390587928 CUST_18646_PI390587928 CUST_23509_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK354759	1306	7e-56	789 - 1003	85	185 / 217	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK372493	1722	1e-67	1252 - 1466	88	190 / 215	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK248348.1	1407	2e-71	258 - 485	88	201 / 228	CUST_5200_PI390587928 CUST_5215_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK375488	1613	4e-78	102 - 329	90	205 / 228	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK360597	1495	7e-66	71 - 297	87	197 / 227	CUST_34710_PI390587928 CUST_14537_PI390587928 CUST_11183_PI390587928 CUST_34621_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK248213.1	1169	8e-70	739 - 966	88	200 / 228	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360704	1727	4e-143	996 - 1451	87	396 / 456	CUST_15758_PI390587928 CUST_14502_PI390587928 CUST_34666_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360864	759	6e-71	104 - 321	89	194 / 218	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK357664	735	2e-71	102 - 329	88	201 / 228	CUST_24042_PI390587928 CUST_40121_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK252410.1	727	4e-73	92 - 319	89	202 / 228	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK251133.1	706	4e-58	17 - 235	85	188 / 220	CUST_25229_PI390587928 CUST_14543_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK374035	627	2e-65	19 - 238	87	192 / 220	None	ABC01042 ABC01050 ABC01051 ABC01058 ABC01078 ABC01106 ABC24558
AK373540	720	5e-57	106 - 304	87	174 / 200	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_20236.1	209	1e-57	1 - 206	86	179 / 207	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770
AK375520	755	3e-54	67 - 276	85	179 / 210	CUST_15731_PI390587928	ABC01030 ABC01040 ABC01042 ABC01048 ABC01086 ABC22044