barSeed - Barley Seed Development Database

Probe ABC01048

Source Contig ABC01048

barSeed

Links

Affymetrix Source Sequence (1018 bp)

>ABC01048 1018
GACCCAATCCCCGTCCGATCTCGCCGGAAAATCTCCTCCGACCGATCGAAGCCAAGGCTC
TCTCGTCCTCCTCCTCAAGATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACCATCAC
CCTTGAGGTCGAGTCTTCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGA
GGGCATCCCGCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGGCG
CACTCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCAGGCTCCG
TGGTGGTATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACCTTGGAGGTTGA
GTCCTCGGACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCC
GGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCGGA
TTACAACATCCAGAAGGAATCCACCCTCCACTTGGTGCTCAGGCTCCGTGGTGGTATGCA
GATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTGGAGGTTGAGTCTTCTGACAC
CATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCG
CTTGATCTTCGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGACTACAACATCCA
GAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGGCCAGTAAGTGCCTGGCCA
TGGAGCTGCTTCTGTGTGTGGGTTCACAAGTCTCGAATTCTCATTGCCTTCGGTCTCCTC
CTCCAGTGGAGTTGTCAGTGTGTTGTGTCTATCGTTGCAGTGTCTTTGTTCCTACATTAC
GGTGATCTAGTGTTATTTGAGTTTTGTATCTGCAAACTAAAGCTGTTGTGTAGCAGCAGC
TTGGTGACCCGTGAATAAGTGAGCCCCTGGATTTGGTCTATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360597	1495	2e-71	71 - 298	88	201 / 228	CUST_11183_PI390587928 CUST_14537_PI390587928 CUST_34621_PI390587928 CUST_34710_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK248348.1	1407	3e-74	258 - 484	89	202 / 227	CUST_5200_PI390587928 CUST_5215_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK375488	1613	3e-74	102 - 328	89	202 / 227	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK248213.1	1169	3e-79	739 - 965	90	205 / 227	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360704	1727	2e-161	84 - 539	89	407 / 456	CUST_15758_PI390587928 CUST_34666_PI390587928 CUST_14502_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK371303	1634	7e-71	93 - 319	88	200 / 227	CUST_18646_PI390587928 CUST_23509_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK372915	1481	7e-76	94 - 320	89	203 / 227	CUST_34700_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	2e-81	502 - 729	91	207 / 228	CUST_34489_PI390587928 CUST_14531_PI390587928 CUST_23509_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK252178.1	1017	4e-58	139 - 366	85	193 / 228	CUST_4457_PI390587928 CUST_5216_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK372493	1722	9e-65	112 - 339	86	197 / 228	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK354759	1306	4e-58	105 - 332	85	193 / 228	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK249379.1	803	8e-75	366 - 593	89	203 / 228	CUST_4457_PI390587928 CUST_14536_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK357664	735	2e-71	102 - 329	88	201 / 228	CUST_24042_PI390587928 CUST_40121_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK360864	759	7e-66	104 - 330	87	197 / 227	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK252410.1	727	2e-71	92 - 319	88	201 / 228	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK251133.1	706	1e-57	21 - 241	85	188 / 221	CUST_14543_PI390587928 CUST_25229_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK375520	755	2e-51	72 - 452	77	295 / 385	CUST_15731_PI390587928	ABC01030 ABC01040 ABC01042 ABC01048 ABC01086 ABC22044
AK249354.1	1018	7e-51	139 - 401	81	213 / 264	CUST_5240_PI390587928	ABC01030 ABC01040 ABC01048 ABC01051 ABC01063 ABC01086 ABC01106 ABC22044 ABC51028
MLOC_20236.1	209	7e-51	1 - 206	85	175 / 207	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770