barSeed - Barley Seed Development Database

Probe ABC01078

Source Contig ABC01078

barSeed

Links

Affymetrix Source Sequence (1245 bp)

>ABC01078 1245
TATCCCTCCGGGCCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGTAC
ACTGGCAGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTCGTGG
TGGTATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTC
CTCTGACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCGGA
CCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACACTGGCAGACTA
CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTCGTGGTGGTATGCAGAT
CTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGTCCTCTGACACCAT
CGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGCCT
CATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAA
GGAGTCCACCCTTCACCTGGTGCTCCGCCTTCGTGGTGGCATGCAGATCTTCGTGAAGAC
CCTGACGGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGACAACGTCAA
GGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTCATCTTTGCTGG
CAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTATAACATCCAGAAGGAGTCCACTCT
CCACCTGGTGCTCAGGCTTCGTGGAGGCATGCAGATTTTCGTGAAGACCCTCACCGGCAA
GACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGACAACGTCAAGGCGAAGATCCA
GGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTCATTTTCGCCGGCAAGCAGCTCGA
GGATGGCCGCACTCTGGCAGACTACAACATCCAGAAGGAGTCTACCCTTCACCTGGTGCT
TCGCCTGCGTGGTGGCAAGTAAGTGCCTGGTCATGACGTTGCTTCTGTCTCAGGGTTCAC
AGGTCTTGTGTTGTCGGTGTTCTCACCAAAGGTTGGAGCATGTCTGGTTGTGTCGTTGTT
TCCATTACGGACCTGTTCGGTTGTGTCTAAAACTTGTGCCGTGGCTTTGGATGATGATCT
ATGATTAATAAGTGAGCCGTTAATATCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK372915	1481	4e-128	886 - 1233	91	315 / 348	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK360597	1495	3e-75	71 - 299	89	204 / 229	CUST_14537_PI390587928 CUST_11183_PI390587928 CUST_34710_PI390587928 CUST_34621_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK375488	1613	8e-116	1125 - 1468	89	305 / 344	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK371303	1634	2e-126	1110 - 1460	90	316 / 351	CUST_23509_PI390587928 CUST_18646_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK360704	1727	6e-77	84 - 312	90	205 / 229	CUST_14502_PI390587928 CUST_34666_PI390587928 CUST_15758_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK248348.1	1407	2e-77	258 - 475	91	198 / 218	CUST_5215_PI390587928 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK372493	1722	3e-160	112 - 568	89	407 / 457	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK248213.1	1169	1e-73	55 - 283	89	203 / 229	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK354759	1306	1e-68	105 - 333	87	200 / 229	CUST_5216_PI390587928 CUST_5233_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK357004	1103	2e-126	379 - 729	90	316 / 351	CUST_23509_PI390587928 CUST_34489_PI390587928 CUST_18646_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK252178.1	1017	1e-158	139 - 595	89	406 / 457	CUST_5216_PI390587928 CUST_4457_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	3e-164	138 - 589	90	406 / 452	CUST_5216_PI390587928 CUST_14536_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK252410.1	727	4e-84	92 - 309	93	202 / 218	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK360864	759	4e-84	104 - 330	92	208 / 227	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK357664	735	8e-86	102 - 328	92	209 / 227	CUST_40121_PI390587928 CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK374035	627	8e-66	24 - 250	87	197 / 227	None	ABC01042 ABC01050 ABC01051 ABC01058 ABC01078 ABC01106 ABC24558
AK373540	720	5e-63	108 - 335	86	198 / 230	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK371553	732	2e-56	55 - 282	84	192 / 228	None	ABC01036 ABC01038 ABC01041 ABC01051 ABC01078 ABC01079