barSeed - Barley Seed Development Database

Probe ABC49011

Source Contig ABC49011

barSeed

Links

Affymetrix Source Sequence (390 bp)

>ABC49011 390
GCACGACTATTTCTCTTGAGGTGGAGTCGTCAGACACCATTGACAATGTCAAGGCCAAGA
TCCAGGACAAGGAGGGCATCCCCCCGGACCTTCAGCGCCTGATCTTCGCCGGCAAGCAGC
TGGAGGATGGCCGCACCCTCTTTTTCTACAACATTCAGAAGGTTTCCACCCTTCACCTGG
TGCTTTTTTTTCGTGGNGGACAGTAAACATCCTGGTTCGTCCTGCGGGTGGTGCCCTGTT
TCCCCCCCCCGAACTGTTATCTTGTTCGCGTCAGTCCTATCGTGTTTGTTTGATGAACTA
TCGAGTCACCTATGGGTTTTAAACAGTTGCTGGTACAGCAGTATTATTGAGTAATGAATA
AGTGAACTTCGGGTAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK357004	1103	1e-153	530 - 906	93	349 / 377	CUST_23509_PI390587928 CUST_14531_PI390587928 CUST_34489_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK371303	1634	6e-152	1261 - 1634	93	346 / 374	CUST_23509_PI390587928 CUST_18646_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK372915	1481	2e-51	592 - 761	88	152 / 172	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK249379.1	803	3e-65	406 - 800	79	316 / 400	CUST_4457_PI390587928 CUST_5216_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK252178.1	1017	1e-63	635 - 1013	79	301 / 380	CUST_4457_PI390587928 CUST_5216_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK357664	735	5e-53	147 - 313	89	149 / 167	CUST_40121_PI390587928 CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK360597	1495	9e-51	555 - 738	86	160 / 185	CUST_11183_PI390587928 CUST_34621_PI390587928 CUST_14537_PI390587928 CUST_34710_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770