barSeed - Barley Seed Development Database

Probe ABC01050

Source Contig ABC01050

barSeed

Links

Affymetrix Source Sequence (1259 bp)

>ABC01050 1259
GCCGCACCCTTGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGC
TTCGTGGTGGTATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGG
TGGAGTCCTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGGATTC
CACCGGATCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTG
CGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTTCGCGGTGGTA
TGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCGG
ACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCGGACCAGC
AGCGTCTAATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCGGACTACAACA
TCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTTCGCGGTGGTATGCAGATCTTTG
TGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCGGACACCATCGACA
ACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCGGACCAGCAGCGTCTAATCT
TCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAACATTCAGAAGGAAT
CCACCCTCCACCTTGTCCTCCGCCTTCGTGGTGGCATGCAAATCTTTGTAAAGACCCTCA
CGGGCAAGACCATCACATTGGAGGTGGAGTCTTCGGACACCATCGACAATGTGAAGGCAA
AGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGTAAGC
AGCTTGAGGATGGCCGTACCTTGGCGGACTACAACATTCAGAAGGAGTCCACCCTTCACT
TGGTGCTCCGTCTCCGCGGTGGCCAGTAGGCTCCTGGCCATGGAACTGCTTCTGTCTCTG
GGTTCACAAGCCCCTGTCCATTATGTGTCCTCCAATGGAGTCTGTCTCTGTCTACCGTAC
TGTGATGCAGTATTATCGTTTGTATCTTTGAACTTCTGGTGCGCAGCAGCTTTGGTGAAC
TATGAAAAATAAGTGAGCCCAGGATTCGGTGTATAATTAAAAAAAAAAAGGTCGAGTCTT
CGGACACCTTTGATAACTCTGCCTGATGTTTGCTGTTTTGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK375488	1613	0.0	943 - 1468	92	482 / 526	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK360704	1727	3e-110	1153 - 1450	91	271 / 298	CUST_34666_PI390587928 CUST_15758_PI390587928 CUST_14502_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360597	1495	1e-113	912 - 1209	92	273 / 298	CUST_11183_PI390587928 CUST_34710_PI390587928 CUST_14537_PI390587928 CUST_34621_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK372915	1481	5e-103	937 - 1233	90	266 / 297	CUST_34700_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK371303	1634	4e-99	1162 - 1460	89	265 / 299	CUST_18646_PI390587928 CUST_14531_PI390587928 CUST_23509_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK248348.1	1407	6e-102	871 - 1168	89	266 / 298	CUST_5215_PI390587928 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK248213.1	1169	1e-69	55 - 282	88	200 / 228	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK372493	1722	9e-150	112 - 567	88	402 / 458	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK354759	1306	1e-59	105 - 332	85	194 / 228	CUST_5216_PI390587928 CUST_5233_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK357004	1103	4e-99	431 - 729	89	265 / 299	CUST_34489_PI390587928 CUST_23509_PI390587928 CUST_14531_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK252178.1	1017	1e-94	526 - 822	88	261 / 297	CUST_5216_PI390587928 CUST_4457_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	1e-94	297 - 593	88	261 / 297	CUST_5216_PI390587928 CUST_4457_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK357664	735	2e-81	102 - 329	91	207 / 228	CUST_24042_PI390587928 CUST_40121_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK252410.1	727	1e-79	92 - 319	90	206 / 228	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK360864	759	8e-81	104 - 330	91	206 / 227	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK374035	627	2e-72	24 - 253	88	203 / 230	None	ABC01042 ABC01050 ABC01051 ABC01058 ABC01078 ABC01106 ABC24558
AK373540	720	4e-59	108 - 331	85	194 / 227	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK251133.1	706	4e-59	21 - 250	85	195 / 230	CUST_14543_PI390587928 CUST_25229_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_61131.1	767	8e-51	468 - 673	84	174 / 206	None	ABC01036 ABC01038 ABC01041 ABC01044 ABC01050 ABC01051 ABC01056 ABC01079 ABC01087 ABC22044 ABC47497