barSeed - Barley Seed Development Database

Probe ABC22044

Source Contig ABC22044

barSeed

Links

Affymetrix Source Sequence (657 bp)

>ABC22044 657
GCCGCCTCCAGAGTTCAAACCACCCATCACCGTCTCCCTCCCCCCTTCAGTTCGGAGAGC
TCGAGAAGGAGGAAGGCGAAGCGGCGGGAGCGGAGGACCGACGAGATGCAGATCTTCGTG
AAGACGCTGACGGGGAAGACCATCACCCTCGAGGTCGTGAGCAGCGACACCATCGACAAC
GTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCACCCGGACCAGCAGCGCCTCATCTTC
GCCGGGAAGCAGCTGGACGATGACCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC
ACGATCCATCTCGTGCTCCGCCTCCGCGGGGGCGCCTGCCTGATCGAGCCCAACCTCAAG
GCCCTCGCCCAGAAGTACAACCAGGGCAAGCTCATCTGCCGCAAGTGCTACTCACGCCTG
CCTCCTAAGGCCAAGAGTTGCCGCAAGAAGAAGTGTGGCCACAGCAACCAGCTGCGGTCA
AAGAAGAAGTGCAGGTACTGATGAAGTGCCATGAATGATCAGTTCAACCGGTTGACTACC
TGTTTAAGCTTGCCAGAAGTGTCAGAGTTTTAATAAGCATCTTAATGTAATGTTCCTGCT
GGATGCTGAGCGCTGTCTCTTTCGAAAACTGTTTTATGGTTCAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK373540	720	0.0	3 - 645	99	642 / 643	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_13553.1	326	8e-138	1 - 270	99	269 / 270	None	ABC22044
AK251133.1	706	4e-111	19 - 398	86	331 / 386	CUST_25229_PI390587928 CUST_14543_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_13552.1	454	2e-104	152 - 360	99	208 / 209	None	ABC22044
AK252410.1	727	4e-81	90 - 322	90	212 / 235	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK357664	735	4e-81	100 - 332	90	212 / 235	CUST_24042_PI390587928 CUST_40121_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK360864	759	2e-74	102 - 334	89	208 / 235	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK371303	1634	2e-64	777 - 991	87	188 / 215	CUST_23509_PI390587928 CUST_18646_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
MLOC_61131.1	767	5e-70	294 - 674	80	310 / 386	None	ABC01036 ABC01038 ABC01041 ABC01044 ABC01050 ABC01051 ABC01056 ABC01079 ABC01087 ABC22044 ABC47497
AK357004	1103	2e-64	46 - 260	87	188 / 215	CUST_23509_PI390587928 CUST_18646_PI390587928 CUST_34489_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK372915	1481	9e-63	778 - 1001	86	194 / 225	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK372493	1722	2e-59	1252 - 1472	86	189 / 221	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK354759	1306	2e-59	789 - 1009	86	192 / 224	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK360597	1495	3e-58	527 - 754	85	195 / 230	CUST_14537_PI390587928 CUST_34710_PI390587928 CUST_11183_PI390587928 CUST_34621_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK375488	1613	2e-59	558 - 781	85	194 / 227	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK252178.1	1017	3e-57	137 - 335	87	174 / 200	CUST_14536_PI390587928 CUST_5216_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	2e-59	136 - 365	85	196 / 231	CUST_4457_PI390587928 CUST_5216_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK375520	755	3e-58	48 - 267	86	189 / 221	CUST_15731_PI390587928	ABC01030 ABC01040 ABC01042 ABC01048 ABC01086 ABC22044
AK356610	874	3e-57	137 - 332	87	171 / 196	CUST_34712_PI390587928 CUST_15522_PI390587928	ABC01030 ABC01040 ABC01063 ABC01108 ABC22044 ABC49720
AK249354.1	1018	3e-53	138 - 344	85	176 / 207	CUST_5240_PI390587928	ABC01030 ABC01040 ABC01048 ABC01051 ABC01063 ABC01086 ABC01106 ABC22044 ABC51028