barSeed - Barley Seed Development Database

Probe ABC01038

Source Contig ABC01038

barSeed

Links

Affymetrix Source Sequence (763 bp)

>ABC01038 763
GCCGCCCCCAACCCAAACCCTACCCCGCCGCCACCGTCGCCGCCGCAGCGCGCGGAGGCG
ACCTCGCGCCGCCGCCAAGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCAC
GCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGA
GGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCG
CACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCCG
CGGAGGCGCCAAGAAGCGCAAGAAGAAGACCTACACCAAGCCCAAGAAGCAAAAGCACAA
GCACAAGAAGGTGAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGACGACGCCACCGGCAA
GGTCACCAGGCTCAGGAAGGAGTGCCCCAACGCCGACTGCGGCGCCGGCACCTTCATGGC
CAACCACTTCGACCGCCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAA
GGCTTAGAGGTGGCTTGCGTTTGCTCTGCTCTTTTACCTACCTACCAATCGAGAACCGAA
CTCATTTAGATGTGTCCCGTTTGTCTTTTAAGCTGAAACCTTGGAGTATTATGTTTCCTG
AATATTTCATCGCCTACTCCTGTAATGCGATGCGTGCTTAAATTTTGGTGTCCGTATGCT
ATTAGTCTTAATGATTTTAATCCAAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK252410.1	727	0.0	14 - 726	100	713 / 713	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK357664	735	0.0	19 - 735	92	669 / 729	CUST_24042_PI390587928 CUST_40121_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK360864	759	0.0	43 - 602	96	537 / 560	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
MLOC_17268.1	552	2e-104	1 - 206	100	206 / 206	CUST_13151_PI390587928	ABC01038 ABC31758 ABC32001 ABC36919
MLOC_44900.1	677	3e-88	483 - 677	97	189 / 195	None	ABC01036 ABC01038 ABC01041 ABC01079 ABC01087
AK248348.1	1407	5e-86	256 - 476	93	205 / 221	CUST_5215_PI390587928 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK371303	1634	2e-74	777 - 991	90	194 / 215	CUST_18646_PI390587928 CUST_14531_PI390587928 CUST_23509_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK375488	1613	6e-80	1014 - 1241	90	206 / 228	CUST_5200_PI390587928 CUST_329_PI415269222	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK372915	1481	5e-76	778 - 1004	89	203 / 227	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK372493	1722	1e-72	1252 - 1472	89	197 / 221	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK360704	1727	3e-78	540 - 767	90	205 / 228	CUST_14502_PI390587928 CUST_15758_PI390587928 CUST_34666_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK357004	1103	2e-74	46 - 260	90	194 / 215	CUST_34489_PI390587928 CUST_23509_PI390587928 CUST_18646_PI390587928 CUST_14531_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK360597	1495	4e-77	67 - 298	89	207 / 232	CUST_14537_PI390587928 CUST_11183_PI390587928 CUST_34621_PI390587928 CUST_34710_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK251133.1	706	1e-81	5 - 248	89	218 / 244	CUST_14543_PI390587928 CUST_25229_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK373540	720	5e-81	106 - 338	90	212 / 235	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK252178.1	1017	3e-73	367 - 594	89	202 / 228	CUST_5216_PI390587928 CUST_4457_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	3e-78	119 - 365	88	219 / 248	CUST_4457_PI390587928 CUST_5216_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK248213.1	1169	3e-73	739 - 966	89	202 / 228	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK371553	732	5e-76	56 - 378	83	267 / 323	None	ABC01036 ABC01038 ABC01041 ABC01051 ABC01078 ABC01079
MLOC_61131.1	767	5e-76	455 - 685	89	206 / 231	None	ABC01036 ABC01038 ABC01041 ABC01044 ABC01050 ABC01051 ABC01056 ABC01079 ABC01087 ABC22044 ABC47497
AK354759	1306	5e-71	789 - 1009	89	198 / 223	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
MLOC_20236.1	209	2e-64	1 - 206	88	182 / 206	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770