barSeed - Barley Seed Development Database

Probe ABC01106

Source Contig ABC01106

barSeed

Links

Affymetrix Source Sequence (666 bp)

>ABC01106 666
CCACCCTTCACCTTGTCCTCCGCCTTCGAGGAGGCATGCAGATCTTCGTCAAGACCCTCA
CTGGCAAGACCATCACACTTGAGGTGGAATCATCCGACACCATCGACAACGTCAAGGCCA
AGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGC
AGCTGGAGGATGGTCGCACTCTTGCTGACTACAACATCCAGAAGGAGTCTACCCTCCACC
TTGTCCTCCGCCTCCGTGGTGGTATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCA
TCACTTTGGAGGTTGAGAGTTCTGACACCATTGACAATGTCAAGGCGAAGATCCAGGACA
AGGAGGGGATCCCCCCTGACCAGCAGCGGCTGATCTTTGCTGGCAAGCAGTTGGAGGATG
GCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCC
TCCGTGGTGGTCAGTAATTACACTGACGGTCCTGCTGCTATTAGTCGTATGTCTTGTTAG
TGTTAAGTCTACTGTATCTGGTTTGATGGACCATCGAGTCCCCATGATGTTTGTTGGTTT
CGTGGAAACAGTTGATGGTATGGTTTGGTATGAATAAGTGAATTTGAACCAAAAAAAAAA
AAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK354759	1306	4e-66	105 - 328	87	197 / 226	CUST_5216_PI390587928 CUST_5233_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK252178.1	1017	4e-56	139 - 353	85	185 / 217	CUST_5216_PI390587928 CUST_4457_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK372915	1481	2e-83	94 - 321	91	208 / 228	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK371303	1634	3e-78	93 - 320	90	205 / 228	CUST_14531_PI390587928 CUST_23509_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	9e-88	467 - 729	89	234 / 263	CUST_14531_PI390587928 CUST_34489_PI390587928 CUST_23509_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK372493	1722	4e-66	112 - 335	87	195 / 224	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK248213.1	1169	7e-89	704 - 965	89	235 / 263	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK249379.1	803	9e-103	331 - 593	92	244 / 264	CUST_5216_PI390587928 CUST_14536_PI390587928 CUST_4457_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK248348.1	1407	1e-76	258 - 485	89	204 / 228	CUST_5215_PI390587928 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK360597	1495	4e-71	71 - 297	88	200 / 227	CUST_34621_PI390587928 CUST_34710_PI390587928 CUST_14537_PI390587928 CUST_11183_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK375488	1613	3e-73	102 - 329	89	202 / 228	CUST_329_PI415269222 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK360704	1727	4e-76	84 - 310	89	203 / 227	CUST_15758_PI390587928 CUST_14502_PI390587928 CUST_34666_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360864	759	5e-70	104 - 331	88	202 / 230	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK357664	735	2e-74	102 - 328	89	204 / 229	CUST_40121_PI390587928 CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK252410.1	727	4e-71	92 - 312	89	198 / 223	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK374035	627	2e-69	24 - 253	87	201 / 230	None	ABC01042 ABC01050 ABC01051 ABC01058 ABC01078 ABC01106 ABC24558
AK251133.1	706	4e-66	21 - 241	87	194 / 222	CUST_14543_PI390587928 CUST_25229_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK373540	720	2e-59	108 - 328	86	192 / 224	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
AK249354.1	1018	6e-55	141 - 401	82	214 / 262	CUST_5240_PI390587928	ABC01030 ABC01040 ABC01048 ABC01051 ABC01063 ABC01086 ABC01106 ABC22044 ABC51028
MLOC_20236.1	209	9e-53	1 - 209	85	178 / 210	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770