barSeed - Barley Seed Development Database

Probe ABC01040

Source Contig ABC01040

barSeed

Links

Affymetrix Source Sequence (801 bp)

>ABC01040 801
GCACCAGCCCAAGATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGA
GGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTAT
CCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACGCT
GGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTCCGCGGCGG
CATCATCGAGCCCTCGCTCCAGGCCCTCGCCCGCAAGTACAACCAGGAGAAGATGATCTG
CCGCAAGTGCTACGCTAGGCTGCATCCAAGGGCTGTCAACTGCCGCAAGAAGAAGTGTGG
CCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAGGCTGATTGTTGCTTTCG
TTGTCTGGATAAATCAGTAGACATAAAAATATTTTCCGGTTATCGTTTTGCTGCTCCTCA
GGATGTTGAACCTTGGTTACTCTAGATGAGTACTTGGCCTTGTTTTAATGTCATGACATA
GTGTGTCTGTTGCTGGTAATGTTCATGGTTACTTGTATGATTGTGCACCCTACACGTTCG
GATTTTGGTCTTTTGTTGCTCTGCCACCACAATGTTAGCAAATTTGTGGGCCTGTTTTCA
GAAATTCAGAACAGCTTCGCTGAATTTAAACCAGGATTCTGAAAAATTGGGACTGACCTT
GGTGTGTCTGTCTGTAAATTGTGCTTCCAATCCAAAACGCAGTGTTAAATTTTTGATTTC
CTCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251133.1	706	0.0	9 - 700	100	692 / 692	CUST_14543_PI390587928 CUST_25229_PI390587928	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_33664.2	2257	0.0	1756 - 2235	99	480 / 481	CUST_14543_PI390587928 CUST_34694_PI390587928 CUST_25229_PI390587928	ABC01040
MLOC_33664.1	335	4e-176	1 - 335	100	335 / 335	CUST_25229_PI390587928 CUST_14543_PI390587928	ABC01040
AK373540	720	5e-111	106 - 491	86	331 / 386	None	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01078 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC_20236.1	209	1e-82	1 - 209	93	195 / 209	None	ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01051 ABC01056 ABC01072 ABC01079 ABC01106 ABC01108 ABC50770
AK252410.1	727	5e-81	87 - 319	90	210 / 233	None	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC31758 ABC32001 ABC36919 ABC39287 ABC49693 ABC50770
AK357664	735	5e-81	97 - 329	90	211 / 234	CUST_24042_PI390587928 CUST_40121_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49011 ABC49693 ABC50770
AK360864	759	8e-74	99 - 327	89	203 / 229	CUST_24042_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01087 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC49693 ABC50770
AK252178.1	1017	3e-58	135 - 353	85	188 / 220	CUST_5216_PI390587928 CUST_4457_PI390587928 CUST_14536_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK249379.1	803	1e-72	366 - 586	89	197 / 221	CUST_14536_PI390587928 CUST_4457_PI390587928 CUST_5216_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770
AK372915	1481	5e-66	778 - 995	88	191 / 218	CUST_5216_PI390587928 CUST_34700_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK371303	1634	5e-66	1233 - 1453	87	195 / 223	CUST_18646_PI390587928 CUST_14531_PI390587928 CUST_23509_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	5e-66	502 - 722	87	195 / 223	CUST_23509_PI390587928 CUST_14531_PI390587928 CUST_34489_PI390587928 CUST_18646_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK356610	874	5e-66	136 - 365	87	199 / 230	CUST_15522_PI390587928 CUST_34712_PI390587928	ABC01030 ABC01040 ABC01063 ABC01108 ABC22044 ABC49720
AK354759	1306	5e-66	561 - 781	87	194 / 222	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK360597	1495	5e-66	527 - 756	87	199 / 230	CUST_34621_PI390587928 CUST_14537_PI390587928 CUST_34710_PI390587928 CUST_11183_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK372493	1722	1e-57	1024 - 1244	85	188 / 221	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK375488	1613	2e-59	1014 - 1243	85	195 / 230	CUST_329_PI415269222 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
MLOC_75382.1	302	2e-59	1 - 158	93	147 / 158	None	ABC01040 ABC01108
AK249354.1	1018	9e-59	139 - 340	87	176 / 202	CUST_5240_PI390587928	ABC01030 ABC01040 ABC01048 ABC01051 ABC01063 ABC01086 ABC01106 ABC22044 ABC51028
AK375520	755	2e-55	72 - 270	86	172 / 199	CUST_15731_PI390587928	ABC01030 ABC01040 ABC01042 ABC01048 ABC01086 ABC22044