barSeed - Barley Seed Development Database

Probe ABC01053

Source Contig ABC01053

barSeed

Links

Affymetrix Source Sequence (685 bp)

>ABC01053 685
GATCGACAAAACCCGCCGCAACACAAGCGTCCATCTCACCTCTCGCGAACCTCCATCAAG
ATGCAGATCTTTGTGAAGACTCTCACCGGGAAGACAATCACACTCGAGGTCGAGTCCTCT
GACACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG
CAGCGCCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACACTTGCCGATTACAAT
ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCAGGCTCAGGGGTGGCATGCAGATCTTT
GTGAAGACTCTCACCGGGAAGACCCATCACACTCGAGGTCGAGTCTTCGGATACGATTGA
CAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGAGGTTGAT
CTTTGCGGGCAAGCAGCTTGAGGATGGTCGCACTCTGGCGGATTATAACATTCAGAAGGA
GTCTACTCTCCATCTGGTGCTCCGCCTACGTGGTGGCCAGTGAGTTCTTCGGGCTGGTGG
CATCTTCCCTCGTCTTCTCTTGAGTTTTGTGATGTCTGTGGCATGTGTCTGAAACTCTCT
ATGTGCCATTTGTTAGAACATGTGTTGCTGCCTTTGAGCAGCTTGGTTTATGTTATGATG
AATTAGTGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360597	1495	1e-61	71 - 298	86	196 / 229	CUST_34710_PI390587928 CUST_14537_PI390587928 CUST_34621_PI390587928 CUST_11183_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK360704	1727	3e-63	1224 - 1436	87	187 / 214	CUST_15758_PI390587928 CUST_14502_PI390587928 CUST_34666_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK248348.1	1407	4e-61	258 - 475	86	189 / 219	CUST_5200_PI390587928 CUST_5215_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
AK371303	1634	6e-149	1005 - 1464	87	403 / 461	CUST_14531_PI390587928 CUST_18646_PI390587928 CUST_23509_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK357004	1103	6e-149	274 - 733	87	403 / 461	CUST_14531_PI390587928 CUST_23509_PI390587928 CUST_18646_PI390587928 CUST_34489_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770
AK354759	1306	1e-52	105 - 345	82	201 / 244	CUST_5216_PI390587928 CUST_5233_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770
AK372493	1722	3e-127	108 - 567	85	390 / 461	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK248213.1	1169	9e-68	55 - 295	86	210 / 244	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770