barSeed - Barley Seed Development Database

Probe ABC39599

Source Contig ABC39599

barSeed

Links

Affymetrix Source Sequence (419 bp)

>ABC39599 419
CAGGCTCCGTGGTGGTATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACGCT
GGAGGTTGAGTCCTCGGACCCCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGG
CATTCCCCCGGACCAGCAGGGTTTCATTTTTGTTGGTAAACAGCTTTAGGATGGCCGCCC
CTTGGCGGACTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTTTGGGTGG
TGGCCCCTAAGCTCCTGGTGATGGAGCTGCTCCTGTTTTTAGGTTCCCAAGGCTCGGTGT
TTTTGGTGTTTTAAAGGAGTCTCGTCTGTGTCTTTGTTTCTGGACCGTACTGTGAAGCAG
TTTTATCGTTTGTATCTTTGAACTATGAATAAGTGAGCCCTGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360704	1727	2e-67	524 - 752	87	200 / 230	CUST_14502_PI390587928 CUST_15758_PI390587928 CUST_34666_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK360597	1495	9e-66	283 - 526	85	208 / 244	CUST_34710_PI390587928 CUST_11183_PI390587928 CUST_34621_PI390587928 CUST_14537_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40971 ABC49011 ABC49693 ABC50770
AK248213.1	1169	7e-67	502 - 738	86	204 / 237	None	ABC01035 ABC01036 ABC01037 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01082 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC24558 ABC39287 ABC39599 ABC40971 ABC49693 ABC50770
AK248348.1	1407	6e-63	258 - 472	87	187 / 215	CUST_5200_PI390587928 CUST_5215_PI390587928	ABC01035 ABC01036 ABC01038 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC39599 ABC49693 ABC50770
MLOC_17076.1	689	4e-74	1 - 187	94	175 / 187	CUST_14502_PI390587928 CUST_34666_PI390587928 CUST_15758_PI390587928	ABC01058 ABC01110 ABC01117 ABC39599 ABC40971
AK375488	1613	9e-71	542 - 770	88	202 / 230	CUST_329_PI415269222 CUST_5200_PI390587928	ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC43994 ABC49693 ABC50770
AK372493	1722	6e-63	1240 - 1466	86	196 / 228	CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770
AK354759	1306	3e-56	561 - 775	85	184 / 216	CUST_5233_PI390587928 CUST_5216_PI390587928	ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770