Tag: visualization
New in Flapjack 1.12.05.25
Flapjack has just been updated to version 1.12.05.25. NEW: Sorting by trait can now be done on any number of sort levels. NEW: Redesigned the Sort by Trait dialog to present a tabular control for defining the sort levels. NEW: Added file header support so Flapjack can properly identify its input files. NEW: […]
New in Tablet 1.12.03.26
Tablet has just been updated to version 1.12.03.26. BUG: Fixed a critical bug that was causing i/o problems with certain types of BAM file.
New in Tablet 1.12.02.06
Tablet has just been updated to version 1.12.02.06. NEW: The majority of colours used for the various visualization components are now customizable. NEW: Cigar insertions can now be shown with a permanent overlay. This is in place of the previous mouse-over highlight code. NEW: Added a snapshot history feature which tracks previously visited […]
New in Flapjack 1.11.12.13
Flapjack has just been updated to version 1.11.12.13. NEW: Added the ability to export an all-by-all similarity matrix for the lines within the current view. NEW: Added support for a sort splitter, that denotes that all lines above it are exempt from sorting and always keep their order. Lines below are sorted […]
New in Tablet 1.11.11.01
Tablet has just been updated to version 1.11.11.01. NEW: All of the tables (in the control panel) can now have their contents copied to the clipboard via right-click menu options. NEW: Two new colours are now available with the Read Type scheme. These represent first in pair (mate in different contig) and second […]
New in Tablet 1.11.08.10
Tablet has just been updated to version 1.11.08.10. NEW: Added a new colour scheme for displaying Read Groups in SAM and BAM files. NEW: Added a new control panel tab for viewing and editing Read Group colours. NEW: GFF files now support drag and drop loading. NEW: GFF files can now be specified on the […]
New in Flapjack 1.11.07.06
Flapjack has just been updated to version 1.11.07.06. NEW: Added a new option to the edit menu – Filter missing markers – that allows the removal of markers with missing data over a given threshold limit. NEW: You can now select up to three graphs to be displayed alongside the genotypes at one […]
New in Tablet 1.11.05.03
Tablet has just been updated to version 1.11.05.03. NEW: Consensus sequence data is now cached to disk which should result in less memory being used with large contigs. CHG: Improved the mechanism used to search for read names across non-BAM datasets (should be significantly faster). CHG: Simplified the Search UI so that all […]
New in Flapjack 1.11.04.21
Flapjack has just been updated to version 1.11.04.21. NEW: The CreateProject executable will now append datasets into existing projects if the file already exists. NEW: Phenotypic trait data can now be exported from Flapjack to a file on disk. NEW: QTL data can now be exported from Flapjack to a file on disk. BUG: […]
New in Flapjack 1.11.04.19
Flapjack has just been updated to version 1.11.04.19. NEW: Flapjack is now a version 1.x release, after being published in Bioinformatics. NEW: SCRI become the The James Hutton Institute in April 2011, and Flapjack has been branded accordingly. NEW: Flapjack now supports importing and displaying graph data (http://bioinf.hutton.ac.uk/flapjack/help/graphs.shtml). NEW: Added a Filter […]