Information & Computational Sciences

New in Tablet 1.19.05.28

By on 28/05/2019 in News
New in Tablet 1.19.05.28

Tablet has just been updated to version 1.19.05.28. NEW: Tablet is now JRE11 compatible, and no longer supports 32-bit installs. NEW: The Copy Read Data To Clipboard function will now include a version of the read data with BAM/SAM insertions included in its output. NEW: Added a new overlay option (sticky highlights) that disables the […]

Continue Reading »

New in Flapjack 1.19.03.18

By on 18/03/2019 in News
New in Flapjack 1.19.03.18

Flapjack has just been updated to version 1.19.03.18. NEW: Flapjack now uses Java 11 (JRE11). There will be no more 32bit versions of Flapjack. NEW: Added initial support for direct loading of Intertek-formatted genotype files. NEW: Added a data set count to the title panel of the navigation pane. NEW: The status panel now displays […]

Continue Reading »

New in Flapjack 1.18.06.29

By on 29/06/2018 in News
New in Flapjack 1.18.06.29

Flapjack has just been updated to version 1.18.06.29. CHG: The truncate long line names and long trait values dialogs now use number spinners rather than slider controls. CHG: Implemented a better way of parsing trait data to ensure we get a better idea of whether the data for a given column is numerical or categorical. […]

Continue Reading »

New in Flapjack 1.18.06.13

By on 13/06/2018 in News
New in Flapjack 1.18.06.13

Flapjack has just been updated to version 1.18.06.13. NEW: Flapjack is now BrAPI (https://www.brapi.org) enabled. NEW: Added a new menu option to import via BrAPI to the File menu. NEW: Added a new analysis module to perform line-based pedigree verification. NEW: Added an option to use a SOCKS proxy rather than a normal HTTP proxy. […]

Continue Reading »

New in Tablet 1.17.08.17

By on 17/08/2017 in News
New in Tablet 1.17.08.17

Tablet has just been updated to version 1.17.08.17. NEW: Updated the included Java runtime to 1.8.0_144. CHG: Renamed Show Cigar-I to Show Cigar in the overlays band of the ribbon. CHG: Tablet now doesn’t attempt to render Cigar overlays when the width of a base is less than 1. BUG: Cigar feature creation code can […]

Continue Reading »

New in Flapjack 1.16.10.31

By on 31/10/2016 in News
New in Flapjack 1.16.10.31

Flapjack has just been updated to version 1.16.10.31. NEW: Implemented a new analysis method for calculating marker assisted back crossing (MABC) statistics. NEW: Implemented MABC stats for recurrent parent percentage and linkage drag. NEW: Added a initial dialog for MABC to enable selection of parent lines and MABC parameters. NEW: MABC statistics are displayed in […]

Continue Reading »

New in Flapjack 1.16.03.04

By on 04/03/2016 in News
New in Flapjack 1.16.03.04

Flapjack has just been updated to version 1.16.03.04. NEW: (Experimental) Updated much of Flapjack’s UI to utilize 4K displays (probably Windows only for now). NEW: Added options to the Preferences dialog to control UI scaling. NEW: A trait’s categorical or numerical status is now reflected in its column header (and tooltip). NEW: Tooltip headers are […]

Continue Reading »

Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

By on 13/11/2015 in News
Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

Congratulations to Antonio Ribeiro on the publication of his new BMC Bioinformatics paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome Abstract Background Single Nucleotide Polymorphisms (SNPs) are widely used molecular markers, and their use has increased massively since the inception of Next Generation Sequencing […]

Continue Reading »

Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

By on 13/11/2015 in News
Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

The Tablet team have contributed a chapter to Plant Bioinformatics (2nd Edition): Abstract: This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have […]

Continue Reading »

New in Flapjack 1.15.08.31

By on 31/08/2015 in News
New in Flapjack 1.15.08.31

Flapjack has just been updated to version 1.15.08.31. NEW: Updated all the installers to include the latest version of Java. NEW: The traits table will now show the heatmap colours behind each table cell. NEW: Flapjack can now load HDF5 files that are of a specific Flapjack defined format (experimental). NEW: Importing of large genotype […]

Continue Reading »

Top