Information & Computational Sciences

Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

By on 13/11/2015 in News
Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

Congratulations to Antonio Ribeiro on the publication of his new BMC Bioinformatics paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome Abstract Background Single Nucleotide Polymorphisms (SNPs) are widely used molecular markers, and their use has increased massively since the inception of Next Generation Sequencing […]

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Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

By on 13/11/2015 in News
Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

The Tablet team have contributed a chapter to Plant Bioinformatics (2nd Edition): Abstract: This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have […]

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New in Flapjack 1.15.08.31

By on 31/08/2015 in News
New in Flapjack 1.15.08.31

Flapjack has just been updated to version 1.15.08.31. NEW: Updated all the installers to include the latest version of Java. NEW: The traits table will now show the heatmap colours behind each table cell. NEW: Flapjack can now load HDF5 files that are of a specific Flapjack defined format (experimental). NEW: Importing of large genotype […]

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New in Tablet 1.15.08.28

By on 28/08/2015 in News
New in Tablet 1.15.08.28

Tablet has just been updated to version 1.15.08.28. NEW: The read-shadower now highlights all read pairs in addition to reads under the mouse. NEW: Added SHIFT+mouse wheel support, that scrolls the canvas horizontally. NEW: Updated the installers for better Windows 10 and OS X compatibility. NEW: Updated the Java runtime included in the installers to […]

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New in Strudel 1.15.08.25

By on 25/08/2015 in News
New in Strudel 1.15.08.25

Strudel has just been updated to version 1.15.05.25. NEW: Updated the installers to include the latest versions of the Java Runtime (1.8.0_60). NEW: Updated the installers to include compatibility with the latest versions of OS X. CHG: Removed the SCRI branding from the installers and replaced it with JHI branding.

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New in Flapjack 1.15.04.27

By on 27/04/2015 in News
New in Flapjack 1.15.04.27

Flapjack has just been updated to version 1.15.04.27. BUG: Fixed an issue with importing SSR style data where the number of possible allele states can get very high.

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New in Flapjack 1.15.03.02

By on 02/03/2015 in News
New in Flapjack 1.15.03.02

Flapjack has just been updated to version 1.15.03.02. CHG: Importing of very large genotype files is now significantly faster. BUG: Fixed some NPE/HTTP 500 issues with the remote analysis services when using OS X or Linux clients.

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New in Tablet 1.14.10.20

By on 20/10/2014 in News
New in Tablet 1.14.10.20

Tablet has just been updated to version 1.14.10.20. NEW: Added a new colour scheme that handles read number concordance. NEW: Added experimental support for annotation in the GTF format. NEW: Packing (paired-pack) of data on large coverage is now significantly faster. NEW: More information is provided during the various stages of loading a contig’s data. […]

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New in Flapjack 1.14.09.24

By on 24/09/2014 in News
New in Flapjack 1.14.09.24

Flapjack has just been updated to version 1.14.09.24. NEW: Implemented a new graph based view of each chromosome selectable from the Chromosomes Panel. NEW: Optimised the hiding lines and markers code so it is now significantly faster. NEW: The list of chromosomes is now always sorted and presented alphabetically. NEW: Added a progress tracker dialog […]

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New in Flapjack 1.14.07.21

By on 21/07/2014 in News
New in Flapjack 1.14.07.21

Flapjack has just been updated to version 1.14.07.21. NEW: Added a new colour scheme to visualize MAGIC population data in Flapjack. NEW: Added a new (unfinished) “chromosomes” view of the data set. CHG: Flapjack will now only send any traits active on the current view’s heatmap when passing data to CurlyWhirly. CHG: The recently opened […]

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