Iain Milne
New in CurlyWhirly 1.19.09.04
CurlyWhirly has just been updated to version 1.19.09.04. Improved compatibility with macOS and JRE11, which should reinstate missing About/Preferences options too.
New in Tablet 1.19.09.03
Tablet has just been updated to version 1.19.09.03. NEW: Improved compatibility with macOS and JRE11, which should reinstate missing About/Preferences options too.
New in Tablet 1.19.05.28
Tablet has just been updated to version 1.19.05.28. NEW: Tablet is now JRE11 compatible, and no longer supports 32-bit installs. NEW: The Copy Read Data To Clipboard function will now include a version of the read data with BAM/SAM insertions included in its output. NEW: Added a new overlay option (sticky highlights) that disables the […]
New in Flapjack 1.19.03.18
Flapjack has just been updated to version 1.19.03.18. NEW: Flapjack now uses Java 11 (JRE11). There will be no more 32bit versions of Flapjack. NEW: Added initial support for direct loading of Intertek-formatted genotype files. NEW: Added a data set count to the title panel of the navigation pane. NEW: The status panel now displays […]
New in Flapjack 1.18.06.29
Flapjack has just been updated to version 1.18.06.29. CHG: The truncate long line names and long trait values dialogs now use number spinners rather than slider controls. CHG: Implemented a better way of parsing trait data to ensure we get a better idea of whether the data for a given column is numerical or categorical. […]
New in Flapjack 1.18.06.13
Flapjack has just been updated to version 1.18.06.13. NEW: Flapjack is now BrAPI (https://www.brapi.org) enabled. NEW: Added a new menu option to import via BrAPI to the File menu. NEW: Added a new analysis module to perform line-based pedigree verification. NEW: Added an option to use a SOCKS proxy rather than a normal HTTP proxy. […]
New in Tablet 1.17.08.17
Tablet has just been updated to version 1.17.08.17. NEW: Updated the included Java runtime to 1.8.0_144. CHG: Renamed Show Cigar-I to Show Cigar in the overlays band of the ribbon. CHG: Tablet now doesn’t attempt to render Cigar overlays when the width of a base is less than 1. BUG: Cigar feature creation code can […]
New in Flapjack 1.16.10.31
Flapjack has just been updated to version 1.16.10.31. NEW: Implemented a new analysis method for calculating marker assisted back crossing (MABC) statistics. NEW: Implemented MABC stats for recurrent parent percentage and linkage drag. NEW: Added a initial dialog for MABC to enable selection of parent lines and MABC parameters. NEW: MABC statistics are displayed in […]
New in Flapjack 1.16.03.04
Flapjack has just been updated to version 1.16.03.04. NEW: (Experimental) Updated much of Flapjack’s UI to utilize 4K displays (probably Windows only for now). NEW: Added options to the Preferences dialog to control UI scaling. NEW: A trait’s categorical or numerical status is now reflected in its column header (and tooltip). NEW: Tooltip headers are […]
Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome
Congratulations to Antonio Ribeiro on the publication of his new BMC Bioinformatics paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome Abstract Background Single Nucleotide Polymorphisms (SNPs) are widely used molecular markers, and their use has increased massively since the inception of Next Generation Sequencing […]