Iain Milne
Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings
The Tablet team have contributed a chapter to Plant Bioinformatics (2nd Edition): Abstract: This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have […]
New in Flapjack 1.15.08.31
Flapjack has just been updated to version 1.15.08.31. NEW: Updated all the installers to include the latest version of Java. NEW: The traits table will now show the heatmap colours behind each table cell. NEW: Flapjack can now load HDF5 files that are of a specific Flapjack defined format (experimental). NEW: Importing of large genotype […]
New in Tablet 1.15.08.28
Tablet has just been updated to version 1.15.08.28. NEW: The read-shadower now highlights all read pairs in addition to reads under the mouse. NEW: Added SHIFT+mouse wheel support, that scrolls the canvas horizontally. NEW: Updated the installers for better Windows 10 and OS X compatibility. NEW: Updated the Java runtime included in the installers to […]
New in Strudel 1.15.08.25
Strudel has just been updated to version 1.15.05.25. NEW: Updated the installers to include the latest versions of the Java Runtime (1.8.0_60). NEW: Updated the installers to include compatibility with the latest versions of OS X. CHG: Removed the SCRI branding from the installers and replaced it with JHI branding.
New in Flapjack 1.15.04.27
Flapjack has just been updated to version 1.15.04.27. BUG: Fixed an issue with importing SSR style data where the number of possible allele states can get very high.
New in Flapjack 1.15.03.02
Flapjack has just been updated to version 1.15.03.02. CHG: Importing of very large genotype files is now significantly faster. BUG: Fixed some NPE/HTTP 500 issues with the remote analysis services when using OS X or Linux clients.
New in Tablet 1.14.10.20
Tablet has just been updated to version 1.14.10.20. NEW: Added a new colour scheme that handles read number concordance. NEW: Added experimental support for annotation in the GTF format. NEW: Packing (paired-pack) of data on large coverage is now significantly faster. NEW: More information is provided during the various stages of loading a contig’s data. […]
New in Flapjack 1.14.09.24
Flapjack has just been updated to version 1.14.09.24. NEW: Implemented a new graph based view of each chromosome selectable from the Chromosomes Panel. NEW: Optimised the hiding lines and markers code so it is now significantly faster. NEW: The list of chromosomes is now always sorted and presented alphabetically. NEW: Added a progress tracker dialog […]
New in Flapjack 1.14.07.21
Flapjack has just been updated to version 1.14.07.21. NEW: Added a new colour scheme to visualize MAGIC population data in Flapjack. NEW: Added a new (unfinished) “chromosomes” view of the data set. CHG: Flapjack will now only send any traits active on the current view’s heatmap when passing data to CurlyWhirly. CHG: The recently opened […]
New in Flapjack 1.14.04.29
Flapjack has just been updated to version 1.14.04.29. NEW: Flapjack now recognises bin-headers (#bin) in an input file and displays this information when mousing over an entry. NEW: Lines and markers can now be selected by loading in text files with the names of lines/markers to be selected. NEW: The menus showing colour scheme options […]