Tag: visualization
New in Tablet 1.13.07.31
Tablet has just been updated to version 1.13.07.31. NEW: Tablet’s codebase is now Java 7 across all supported platforms. NEW: Moved OS X over to the Nimbus look and feel. NEW: The number of per-read mismatches against the reference is now shown in the tooltip. NEW: Tablet no longer prompts for updates if it […]
New in Tablet 1.13.05.17
Tablet has just been updated to version 1.13.05.17. BUG: Fixed an issue which meant CIGAR features weren’t being generated for the last contig in a SAM file.
New in Tablet 1.13.05.02
Tablet has just been updated to version 1.13.05.02. NEW: Tablet will now cache and reuse reference files, making subsequent accesses faster.
New in Tablet 1.13.04.22
Tablet has just been updated to version 1.13.04.22. NEW: Experimentally shifted the bundled runtime to Java 7 for OS X and Linux (Windows builds have used it for some time). BUG: Fixed an issue related to parsing of quality in AFG files. BUG: Fixed an issue with incorrect reads showing up in the visible […]
New in Flapjack 1.13.03.19
Flapjack has just been updated to version 1.13.03.19. BUG: Searching for lines by name was no longer working.
New in Flapjack 1.13.03.18
Flapjack has just been updated to version 1.13.03.18. NEW: Added support for duplicating a line. NEW: Optimised some of the similarity matrix calculation code to make it about 50% faster. NEW: Enhanced SplitProject so it can selectively process datasets, with optional renaming of them. BUG: Export options for all-chromosomes were not behaving properly […]
New in CurlyWhirly 1.13.01.30
CurlyWhirly has just been updated to version 1.13.01.30. NEW: Updated branding from SCRI to JHI and MASAGRO. CHG: Changed the about box style to bring it inline with our other applications. CHG: Updated the source code to be Java 7 compatible. NEW: Moved away from a menu driven UI to a toolbar drive UI. NEW: […]
New in Tablet 1.12.12.05
Tablet has just been updated to version 1.12.12.05. NEW: The features table can now be filtered by type, name, or start/end position. NEW: Added support for dummy read based annotation in the SAM/BAM format. NEW: Added support for SEQ == * in the SAM/BAM format. NEW: Added support for SEQ containing ‘=’ in the SAM/BAM […]
New in Tablet 1.12.09.03
Tablet has just been updated to version 1.12.09.03. BUG: Command line parameters were not being passed to Tablet on OS X.
New in Tablet 1.12.08.29
Tablet has just been updated to version 1.12.08.29. NEW: Tablet’s zoom levels now supports many hundreds of thousands of bases on screen at once (superzoom). NEW: Reinstated the option to enable/disable read caching to disk, along with a newer option to not cache data from BAM files unless desired. NEW: Read group information […]