New in Flapjack 1.12.05.25
Flapjack has just been updated to version 1.12.05.25.
NEW: Sorting by trait can now be done on any number of sort levels. NEW: Redesigned the Sort by Trait dialog to present a tabular control for defining the sort levels. NEW: Added file header support so Flapjack can properly identify its input files. NEW: Added drag and drop support for all input files (so long as they carry header information). NEW: All generated output files now include header information in them. NEW: Graph data can now be imported into Flapjack using the Wiggle data format. NEW: Added a splitproject executable to handle importing .flapjack files and re-generating their component parts (map file, genotype file, etc). NEW: Added a new dialog for quick exporting all project data back to disk in raw file format. NEW: The split between the original chromosomes on the all-chromosomes view is now shown graphically. NEW: QTL should now be correctly drawn on the super-chromosome view. BUG: Fixed various selection state issues when using the all-chromosomes view. BUG: The show/hide dialog now displays the correct marker count when dealing with the all-chromosomes view. BUG: Fixed various display misc issues when sorting/finding/etc via the all-chromosomes view. BUG: Importing graph data for an all-chromosomes set now works correctly. BUG: The minimum and maximum values for a graph weren’t being calculated properly if some markers were missing data. BUG: Fixed dialogs disappearing if the user’s screen resolution had changed since they were last visible. BUG: Removing QTL from a project and then resaving was breaking the project file. BUG: Cloning a view was not properly copying across the QTL information. BUG: Selecting a QTL (and toggling marker states) switched the view to Marker Mode but left the toolbar/menu states incorrect. BUG: Fixed the ‘Comparison method violates its general contract’ error with certain sort operations. BUG: Exporting map and genotype data still included the duplicated markers and genotypes from any all-chromosomes view. BUG: Fixed a problem that saw QTL being duplicated after (re)saving a project in XML format.