Tag: genotyping

Flapjack has just been updated to version 1.18.06.29. CHG: The truncate long line names and long trait values dialogs now use number spinners rather than slider controls. CHG: Implemented a better way of parsing trait data to ensure we get a better idea of whether the data for a given column is numerical or categorical. […]

Flapjack has just been updated to version 1.18.06.13. NEW: Flapjack is now BrAPI (https://www.brapi.org) enabled. NEW: Added a new menu option to import via BrAPI to the File menu. NEW: Added a new analysis module to perform line-based pedigree verification. NEW: Added an option to use a SOCKS proxy rather than a normal HTTP proxy. […]

Flapjack has just been updated to version 1.16.10.31. NEW: Implemented a new analysis method for calculating marker assisted back crossing (MABC) statistics. NEW: Implemented MABC stats for recurrent parent percentage and linkage drag. NEW: Added a initial dialog for MABC to enable selection of parent lines and MABC parameters. NEW: MABC statistics are displayed in […]

Flapjack has just been updated to version 1.16.03.04. NEW: (Experimental) Updated much of Flapjack’s UI to utilize 4K displays (probably Windows only for now). NEW: Added options to the Preferences dialog to control UI scaling. NEW: A trait’s categorical or numerical status is now reflected in its column header (and tooltip). NEW: Tooltip headers are […]

Flapjack has just been updated to version 1.15.08.31. NEW: Updated all the installers to include the latest version of Java. NEW: The traits table will now show the heatmap colours behind each table cell. NEW: Flapjack can now load HDF5 files that are of a specific Flapjack defined format (experimental). NEW: Importing of large genotype […]

Flapjack has just been updated to version 1.15.04.27. BUG: Fixed an issue with importing SSR style data where the number of possible allele states can get very high.

Flapjack has just been updated to version 1.15.03.02. CHG: Importing of very large genotype files is now significantly faster. BUG: Fixed some NPE/HTTP 500 issues with the remote analysis services when using OS X or Linux clients.

Flapjack has just been updated to version 1.14.09.24. NEW: Implemented a new graph based view of each chromosome selectable from the Chromosomes Panel. NEW: Optimised the hiding lines and markers code so it is now significantly faster. NEW: The list of chromosomes is now always sorted and presented alphabetically. NEW: Added a progress tracker dialog […]

Flapjack has just been updated to version 1.14.07.21. NEW: Added a new colour scheme to visualize MAGIC population data in Flapjack. NEW: Added a new (unfinished) “chromosomes” view of the data set. CHG: Flapjack will now only send any traits active on the current view’s heatmap when passing data to CurlyWhirly. CHG: The recently opened […]

Flapjack has just been updated to version 1.14.04.29. NEW: Flapjack now recognises bin-headers (#bin) in an input file and displays this information when mousing over an entry. NEW: Lines and markers can now be selected by loading in text files with the names of lines/markers to be selected. NEW: The menus showing colour scheme options […]