Tag: genotyping

Flapjack has just been updated to version 1.20.10.07. NEW: Huge changes to Flapjack’s BrAPI codebase with the result that Flapjack is now BrAPI version 2.0 compliant. NEW: BrAPI support includes downloading of data in both JSON and Flapjack (bulk file) formats. NEW: Flapjack now uses the actual variant set name (from BrAPI) to name an […]

Flapjack has just been updated to version 1.19.09.04. NEW: Improved compatibility with macOS and JRE11, which should reinstate missing About/Preferences options too.

Flapjack has just been updated to version 1.19.07.04. NEW: Enabled an early version of a Forward Breeding Analysis.

Flapjack has just been updated to version 1.19.03.18. NEW: Flapjack now uses Java 11 (JRE11). There will be no more 32bit versions of Flapjack. NEW: Added initial support for direct loading of Intertek-formatted genotype files. NEW: Added a data set count to the title panel of the navigation pane. NEW: The status panel now displays […]

Flapjack has just been updated to version 1.18.06.29. CHG: The truncate long line names and long trait values dialogs now use number spinners rather than slider controls. CHG: Implemented a better way of parsing trait data to ensure we get a better idea of whether the data for a given column is numerical or categorical. […]

Flapjack has just been updated to version 1.18.06.13. NEW: Flapjack is now BrAPI (https://www.brapi.org) enabled. NEW: Added a new menu option to import via BrAPI to the File menu. NEW: Added a new analysis module to perform line-based pedigree verification. NEW: Added an option to use a SOCKS proxy rather than a normal HTTP proxy. […]

Flapjack has just been updated to version 1.16.10.31. NEW: Implemented a new analysis method for calculating marker assisted back crossing (MABC) statistics. NEW: Implemented MABC stats for recurrent parent percentage and linkage drag. NEW: Added a initial dialog for MABC to enable selection of parent lines and MABC parameters. NEW: MABC statistics are displayed in […]

Flapjack has just been updated to version 1.16.03.04. NEW: (Experimental) Updated much of Flapjack’s UI to utilize 4K displays (probably Windows only for now). NEW: Added options to the Preferences dialog to control UI scaling. NEW: A trait’s categorical or numerical status is now reflected in its column header (and tooltip). NEW: Tooltip headers are […]

Flapjack has just been updated to version 1.15.08.31. NEW: Updated all the installers to include the latest version of Java. NEW: The traits table will now show the heatmap colours behind each table cell. NEW: Flapjack can now load HDF5 files that are of a specific Flapjack defined format (experimental). NEW: Importing of large genotype […]

Flapjack has just been updated to version 1.15.04.27. BUG: Fixed an issue with importing SSR style data where the number of possible allele states can get very high.