Tag: genotyping
New in Flapjack 1.16.10.31

Flapjack has just been updated to version 1.16.10.31. NEW: Implemented a new analysis method for calculating marker assisted back crossing (MABC) statistics. NEW: Implemented MABC stats for recurrent parent percentage and linkage drag. NEW: Added a initial dialog for MABC to enable selection of parent lines and MABC parameters. NEW: MABC statistics are displayed in […]
New in Flapjack 1.16.03.04

Flapjack has just been updated to version 1.16.03.04. NEW: (Experimental) Updated much of Flapjack’s UI to utilize 4K displays (probably Windows only for now). NEW: Added options to the Preferences dialog to control UI scaling. NEW: A trait’s categorical or numerical status is now reflected in its column header (and tooltip). NEW: Tooltip headers are […]
New in Flapjack 1.15.08.31

Flapjack has just been updated to version 1.15.08.31. NEW: Updated all the installers to include the latest version of Java. NEW: The traits table will now show the heatmap colours behind each table cell. NEW: Flapjack can now load HDF5 files that are of a specific Flapjack defined format (experimental). NEW: Importing of large genotype […]
New in Flapjack 1.15.04.27

Flapjack has just been updated to version 1.15.04.27. BUG: Fixed an issue with importing SSR style data where the number of possible allele states can get very high.
New in Flapjack 1.15.03.02

Flapjack has just been updated to version 1.15.03.02. CHG: Importing of very large genotype files is now significantly faster. BUG: Fixed some NPE/HTTP 500 issues with the remote analysis services when using OS X or Linux clients.
New in Flapjack 1.14.09.24

Flapjack has just been updated to version 1.14.09.24. NEW: Implemented a new graph based view of each chromosome selectable from the Chromosomes Panel. NEW: Optimised the hiding lines and markers code so it is now significantly faster. NEW: The list of chromosomes is now always sorted and presented alphabetically. NEW: Added a progress tracker dialog […]
New in Flapjack 1.14.07.21

Flapjack has just been updated to version 1.14.07.21. NEW: Added a new colour scheme to visualize MAGIC population data in Flapjack. NEW: Added a new (unfinished) “chromosomes” view of the data set. CHG: Flapjack will now only send any traits active on the current view’s heatmap when passing data to CurlyWhirly. CHG: The recently opened […]
New in Flapjack 1.14.04.29

Flapjack has just been updated to version 1.14.04.29. NEW: Flapjack now recognises bin-headers (#bin) in an input file and displays this information when mousing over an entry. NEW: Lines and markers can now be selected by loading in text files with the names of lines/markers to be selected. NEW: The menus showing colour scheme options […]
New in Flapjack 1.14.03.17

Flapjack has just been updated to version 1.14.03.17. NEW: The project format is now an sqlite database file, wrapped around the original Flapjack xml. Existing projects in xml (or compressed xml) should still load into Flapjack. NEW: Flapjack can now save large analysis results (eg similarity matrices, dendrograms, etc) directly to its database file without […]
New in Flapjack 1.13.03.19

Flapjack has just been updated to version 1.13.03.19. BUG: Searching for lines by name was no longer working.